Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2599 277 1e-69 seq19961 206 2e-48 >seq2599 Length=48712 Score = 277 bits (306), Expect = 1e-69 Identities = 1022/1584 (65%), Gaps = 59/1584 (4%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || || |||||||| || | ||| || | ||| || | | || |||||||| ||| Sbjct 37982 TCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAATACATGCCTGTC 37923 Query 65138 TTGAGGCCA-GCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||| ||| || | ||| | || || ||||| |||| | ||| |||||| | || Sbjct 37922 TTGAGACCAAGCTC-CCAGCCGTAAAAGTGCATTGATGTCAGTTTACTATAATTTGTTTC 37864 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||| || | || |||||||| || || ||||| || ||| ||||| || ||||| Sbjct 37863 AGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGATCGGCTGCCAT 37804 Query 65257 GTCAATGATACGACGTCC-CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | |||||| | || || |||||||| || || ||| || | | || Sbjct 37803 CTTGATGATATT-CTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCTTGAGATCTT 37745 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATC 65374 |||||| | | | ||||| ||||| | | || | | || ||||||||| Sbjct 37744 CTGGAATATTG---AGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCG-TTACGCATC 37689 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 | || |||||| |||| || | |||| || || ||| || | || | || || Sbjct 37688 GCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCACTACCTGA 37629 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||| |||| || || || |||| | || ||| | |||| ||||||| Sbjct 37628 AACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCAATGGATTCA 37569 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACA-ATGA--G 65551 | ||||| || || || || || ||||| || ||||||||||| ||| | | || | Sbjct 37568 TTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGC---CAATAGAAGACTG 37512 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || || | |||| | |||| || | | ||||||||| ||| | | || Sbjct 37511 TTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGAAGTA 37452 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | |||| || |||||||| | |||| | || || | | || || || Sbjct 37451 GGGGTGACACCC------CACATATCATACTGCAATATACCCTTAGAGACAGGCGAGCCA 37398 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | | ||||| || || ||| || |||| |||||| | || | || | Sbjct 37397 ACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCG 37338 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | ||||| || || || || | |||||||| ||| || ||| ||| | || Sbjct 37337 TAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGT 37278 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 | || ||| | || ||||| || || |||||||| || |||||||| || ||||||||| Sbjct 37277 AGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGATGA 37218 Query 65852 CGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 || ||| ||| ||| || || || || ||||| || | | ||| ||||| || Sbjct 37217 CGTTTGTTGCCACG-CTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTT 37159 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 | || |||||||| | | | |||| | | || ||| ||| || Sbjct 37158 AAGGTTTCGTGTCACAA-------GTTTCGTCACCTCTTTT---------AATTTTT-GG 37116 Query 65971 ACGATCGGGAGTGCCGGACACCACAAAC---TTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 | | ||| | || | |||||| ||| || || ||||| || || || || Sbjct 37115 AAG-TCGTAATAACCCTCCTTGACAAACCGATTG---AGCGCTAGAGAGGCAAGATTACA 37060 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||| || || || || |||| | ||||| | || ||| || || | |||| || Sbjct 37059 GACTGCAATTTCATCGGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTT 37000 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 || || || | || |||||||| ||||| || || |||||||||||||| | ||| || Sbjct 36999 AATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATA 36940 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG------AGCGCGTGC 66201 ||| ||||| || |||| ||| |||| || || | |||||| |||| | | Sbjct 36939 CGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCAAAGTTTCTGAGCGGGCAC 36880 Query 66202 CTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGA 66261 || |||| || || ||| || || ||||| | |||||| | | || || Sbjct 36879 CTGT--CGTAAATAGCGGCCTTCCATT----TCGTATTTTTCGTACAACTTGTCAAACTC 36826 Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| ||||| ||| | || |||||| || |||||||| || |||||| | Sbjct 36825 TTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGTC 36766 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || | | || | ||||||||| |||||||| ||||| || || ||||||||||| || Sbjct 36765 ATTATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACG 36706 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || || || || |||||| |||||| |||| ||||||||| || || ||||| | Sbjct 36705 CGCACGATGTTCTTCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCC 36646 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 |||||||| ||||| || || || |||| || | ||| || || ||||| || Sbjct 36645 GTGCCATGGCTCCAGATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAAC 36586 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || || || ||| ||| | || || | ||| ||||||| || || || | ||||| Sbjct 36585 ATACCGGGCAGTATTATTGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATT 36526 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 || || | || || || || || ||| ||| | || | ||||| ||||| Sbjct 36525 TGTACCAGCTATATAAGACCCAGCTGGCCTAATACAGTGTATGTTAATTCCAATGCCACC 36466 Query 66622 GGCCGTCTTCGAGATGGCAGCACA 66645 || | || |||||| |||||| Sbjct 36465 AGCAGATTTAGAGATGAGAGCACA 36442 >seq19961 Length=25414 Score = 206 bits (228), Expect = 2e-48 Identities = 455/674 (68%), Gaps = 15/674 (2%) Strand=Plus/Plus Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | || || ||||| ||| |||||||||| || |||||||| || ||||| ||| Sbjct 14196 TTCTCCCAAGACGTGCAGGTGACGGAGGCGCGCTGCTTCTACGGGTTTCAGATCATGATG 14255 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| | || ||||| ||||| | | | || | || ||||||| || | | Sbjct 14256 GAGAACATTCATTCGGAAATGTATTCTCTCTTACTCAACACCTACATCACCGATCCCCAG 14315 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || | | ||||| |||||||||||||| || | || ||| || || Sbjct 14316 GAGCGCGACCACCTCTTCAACGCCATCGAGACGATGCCATGCATCAAAAAGAAGGCCGAC 14375 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| | |||||| | || ||| || || | || || || | | || | Sbjct 14376 TGGGCCCTTGCCTGGATCGGGA--ACGACGACGCCACCTACGGCGAGCGCGTCGTCGCGT 14433 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | |||| |||||||| | || ||||| ||| | || ||| | ||||| ||| |||||| Sbjct 14434 TCGCGGCCGTCGAGGGCATCTTCTTCAGCGGAGCTTTCGCCTCGATCTTCTGGATGAAGA 14493 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| ||||| | ||||| || |||| ||| || ||| | || |||||||| ||||||| Sbjct 14494 AACGCGGACTCCTACCCGGGCTCACCTACAGTAACGAGCTCATCTCACGCGATGAGGGCA 14553 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 ||||| || || || ||| | || | ||||||| || ||| ||| Sbjct 14554 TGCATACGGAGTTCGCCTGCTTGATGTT---TTGGCATCTGGTCAACAAGCCGAGCCAGG 14610 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 || | | ||||| | || |||||| ||||||||||||| || || || || | Sbjct 14611 AGAGAATCCACCAGATTATCAAGGATGCGGTAGCTATCGAACAGGAGTTCCTCACCGAGG 14670 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || |||| || | | |||||||||| || | || ||| |||||| || || |||| Sbjct 14671 CTCTGCCTGTTGCCATGCTCGGCATGAACTGCGATCTCATGAAGCAGTACATCGAGTTTG 14730 Query 61802 TTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTAT---AATACGAAAAAC 61857 | ||||| | ||| | |||| | | | ||| | || ||| | | ||| || | Sbjct 14731 TGGCCGATCACCTGCTTAGCGATCTAGACTGTGA--CAAAT-TATGGAACTCCGAGAATC 14787 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 || || ||||||||||| || || |||| ||||| || || || |||||||| ||| Sbjct 14788 CC-TTCGATTTCATGGAGCAAATCTCCATGGAAGGCAAAACTAACTTCTTCGAGAAGCGT 14846 Query 61918 GTAGGCGACTATCA 61931 || || || ||||| Sbjct 14847 GTCGGGGAGTATCA 14860 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| ||||| ||| || || | ||||| || ||||| || || ||| | ||||| Sbjct 13431 AGAAAATCCCAATCGCTTTGTGCTATTCCCGATTGAGTACCCCGACATCTGGAGGATGTA 13490 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 ||| ||||| |||| || || ||||| ||||||||||||||| | ||||| ||| Sbjct 13491 CAAGAAGGCCCAAGCGTCGTTTTGGACTACTGAGGAGGTCGATTTGGCAAAAGATATGGC 13550 Query 61161 TGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||| | | || | | |||| | ||| |||||||| | ||||||||||| Sbjct 13551 TGACTGGCAAAGGCTAAAGCCCCAAGAACGCGAATTCCTTAAACATATTTTGGCGTTCTT 13610 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 || ||||| || || ||||| || ||||| Sbjct 13611 CGCGGCTTCTGATGGAATCGTTAACGAGAA 13640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397404401264960