Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq66829 361 2e-95 seq49942 109 2e-19 seq22547 104 8e-18 seq62471 91.5 5e-14 >seq66829 Length=2846 Score = 361 bits (400), Expect = 2e-95 Identities = 458/627 (73%), Gaps = 2/627 (0%) Strand=Plus/Minus Query 23529 GAAACTGCTCTTTGGGATAC-GCCCACTGTTCGAGCAATCCGGCCAGTTCGTTAACCAGC 23587 |||| || ||||| | ||| | ||||||||| ||||| | || |||||||| || || Sbjct 2527 GAAATTGTTCTTTAG-ATAGAGACCACTGTTCTAGCAAACACGCTAGTTCGTTCACAAGT 2469 Query 23588 TCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGA 23647 ||||||||||||||| | ||||| |||||||| |||| || || || || || || ||| Sbjct 2468 TCCAGCATATCACGGCTGCGAATATGCTTCTGTACCAACTCTAGTAGTGCGACACGCCGA 2409 Query 23648 TGGGTCAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGA 23707 ||||| |||||||| ||||| | ||||| || ||||| ||||| |||||||| || | Sbjct 2408 TGGGTGAGGATTTCCTCATCGGCTATTGTCGTAATATCTACCAGTGGAAATGCTTGCGTA 2349 Query 23708 TAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGA 23767 || || | || | |||||| || ||||||||| | || | ||||| || ||| Sbjct 2348 TAGACAGACTTTGCTAGTTCTGGTTCCATAAAACAGTCTAACCATTGGGTGCTATAAGGA 2289 Query 23768 TACGGCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTG 23827 || || || || ||||||||||| || |||||||| || || || |||| | | || ||| Sbjct 2288 TAGGGTGAAGTTGTGCCGTGGTAGAATAGCAGCGGTATCACTACTGGTAACCGGTCATTG 2229 Query 23828 CCCTGTTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATC 23887 || || |||||||| ||||||||||| || || | ||| || | || ||||| ||||| Sbjct 2228 CCTTGCTCTAGATGGCGCTGCATCGCCGCCACTGTATAGCGCAATAAGCGAAATACCATC 2169 Query 23888 AGCTTTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTC 23947 |||| ||||| || ||||||||||| || ||||| ||||| || || ||| || | Sbjct 2168 TGCTTGTCCGGACGACTCTGGTGCTCAATGAGACAATAGACATAGCCCGGATGACCTGCG 2109 Query 23948 GTGGTCTTCATCGAGTAGAGCATATCCGAGCACTGGCCCTTCAGGTCGTCTTCGATAAAT 24007 || || || |||| || || | ||||||||| ||| ||||| ||||||||||| Sbjct 2108 GTAGTTTTTATCGCATACAGAACATCCGAGCATTGGGTGCGTAGGTCATCTTCGATAAAG 2049 Query 24008 GAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAGA 24067 ||| || | ||||||| ||| ||||| ||| ||| || || || | || | | Sbjct 2048 CTGCCCGACGTTATCGCCATCATGCTGAAATTACAGTGCTGGCGTAGATGTGCGGGTAAA 1989 Query 24068 TGGATTTCCAGAAAGTCCCGAGCGACCGCGATATCGCCAAGGAACTTTTTGAATACGTGG 24127 || ||||||| |||||| || || ||||| ||||| | | || || || || | | | Sbjct 1988 TGAATTTCCAAAAAGTCACGTGCAACCGCAATATCACTGAAAAATTTCTTAAACAGGCTG 1929 Query 24128 TCATGGTGCGACAGGGATTTCGTCATC 24154 || ||||| || || || | |||||| Sbjct 1928 TCGTGGTGGGAAAGTGACATAGTCATC 1902 >seq49942 Length=1266 Score = 109 bits (120), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 28708 TTCATGCCGCACCTCCCGCTTTCAGAAGGGCCGCACGCTGGCGAACGGTAAGGTGTTTGG 28767 ||||||| |||||||| |||||| |||||| ||||| ||| |||||||| | Sbjct 446 TTCATGCGGCACCTCCG------AGAAGGTACGCACGTTGGCGGGTGGTGAGGTGTTTCG 499 Query 28768 ATTGGTGGGCAAAGCTCAAAAGCTGCCCGGTCGTGATGCTGCACGCTTTCAACAGCCGTG 28827 || | |||||||||| | |||| | || | |||| |||| || |||| || ||| Sbjct 500 ATGTGAAAACAAAGCTCAAGAACTGCTCTGTTGATATGCCGCACACTGTCAAAAGGTGTG 559 Query 28828 CGATATGCGTACTATTCCGCATAGCTCAACTCTTAGTCTACTTAGGTTTTGGGTTAGCTG 28887 ||||||||||| ||| ||||||| |||| ||| ||||| |||||||||||| Sbjct 560 CGATATGCGTAGCATTGCGCATAGTCTGACTCCTAGCTGGTTTAGGGGTTGGGTTAGCTG 619 Query 28888 ACTACGGGAAGGTC 28901 || |||| ||||| Sbjct 620 GCTGCGGG-AGGTC 632 Score = 98.7 bits (108), Expect = 3e-16 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 48689 TCATGCGCCACCTCCCATGCTCAGGAGATAAGCACGTTGGCGAGGGGTCAAATGTCTGGA 48748 ||||||| ||||||| | | || || ||||||||||| | ||| | ||| | || Sbjct 447 TCATGCGGCACCTCCGA------GAAGGTACGCACGTTGGCGGGTGGTGAGGTGTTTCGA 500 Query 48749 TTGGCGGGCAAAGCTCAAAAGCTGCCCGGTCGTGATCTTGCACGCTTTCAACAGCCGTGC 48808 | | |||||||||| | |||| | || | || |||| || |||| || |||| Sbjct 501 TGTGAAAACAAAGCTCAAGAACTGCTCTGTTGATATGCCGCACACTGTCAAAAGGTGTGC 560 Query 48809 GATATGCGTACTATTCCGCATAGCTCAACTCCTAGTCTACGTAGGTTTTGGGTTAGCTGG 48868 |||||||||| ||| ||||||| |||||||| |||| ||||||||||||| Sbjct 561 GATATGCGTAGCATTGCGCATAGTCTGACTCCTAGCTGGTTTAGGGGTTGGGTTAGCTGG 620 Query 48869 CTGCGTGAGGT 48879 ||||| ||||| Sbjct 621 CTGCGGGAGGT 631 >seq22547 Length=1033 Score = 104 bits (114), Expect = 8e-18 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 45181 AACGCCGGGCGGTGCTTCAGATGTTCGTCGCGCTCATCCACCCAGTAATCGAACTGGTCG 45240 || |||||||||||| ||| || ||| | ||| || | | ||| ||||||| ||| Sbjct 870 AAGGCCGGGCGGTGCAGCAGGTGCTCGCCCAACTCGTCGATGCGGTAGTCGAACTCGTCA 929 Query 45241 GCGGTATACACCGCCTTGCTGACGATATTGGCGACCTGCCCGGATTGACGGGCACGCTTG 45300 | || || ||| ||||| || ||| || || ||||| ||||| || ||||| || ||| Sbjct 930 GAGGCGTAGACCACCTTGGCGATGATGTTCGCAACCTGACCGGACTGGCGGGCGCGTTTG 989 Query 45301 AGCACACCATCGACCATAGGCATGTAAACCAC 45332 ||||| || || ||||| |||||||| ||||| Sbjct 990 AGCACCCCGTCAACCATCGGCATGTAGACCAC 1021 >seq62471 Length=1007 Score = 91.5 bits (100), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 48724 GTTGGCGAGGGGTCAAATGTCTGGATTGGCGGGCAAAGCTCAAAAGCTGCCCGGTCGTGA 48783 ||||||| | ||| | ||| | ||| | |||||||||| | |||| | || | | Sbjct 458 GTTGGCGGGTGGTGAGGTGTTTCGATGTGAAAACAAAGCTCAAGAACTGCTCTGTTGATA 399 Query 48784 TCTTGCACGCTTTCAACAGCCGTGCGATATGCGTACTATTCCGCATAGCTCAACTCCTAG 48843 | |||| || |||| || |||||||||||||| ||| ||||||| |||||||| Sbjct 398 TGCCGCACACTGTCAAAAGGTGTGCGATATGCGTAGCATTGCGCATAGTCTGACTCCTAG 339 Query 48844 TCTACGTAGGTTTTGGGTTAGCTGGCTGCGTGAGGTAATGA-CTCTCGTAGCTAGCGC-T 48901 |||| |||||||||||||||||| ||||| | ||||||| | ||||| | Sbjct 338 CTGGTTTAGGGGTTGGGTTAGCTGGCTGCGGGAGGTTGCAAGCTCTCGTGGTCAGCGCTT 279 Query 48902 TTATTTA 48908 ||||||| Sbjct 278 TTATTTA 272 Score = 91.5 bits (100), Expect = 5e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 28746 TGGCGAACGGTAAGGTGTTTGGATTGGTGGGCAAAGCTCAAAAGCTGCCCGGTCGTGATG 28805 ||||| ||| |||||||| ||| | |||||||||| | |||| | || | ||| Sbjct 456 TGGCGGGTGGTGAGGTGTTTCGATGTGAAAACAAAGCTCAAGAACTGCTCTGTTGATATG 397 Query 28806 CTGCACGCTTTCAACAGCCGTGCGATATGCGTACTATTCCGCATAGCTCAACTCTTAGTC 28865 | |||| || |||| || |||||||||||||| ||| ||||||| |||| ||| Sbjct 396 CCGCACACTGTCAAAAGGTGTGCGATATGCGTAGCATTGCGCATAGTCTGACTCCTAGCT 337 Query 28866 TACTTAGGTTTTGGGTTAGCTGACTACGGGAAGGTCGAATTTCCTGTAGTTAGCGCTACT 28925 ||||| |||||||||||| || ||||| | | || || || || |||||| | Sbjct 336 GGTTTAGGGGTTGGGTTAGCTGGCTGCGGGAGGTTGCAAGCTCTCGTGGTCAGCGCTTTT 277 Query 28926 ACTTA 28930 | ||| Sbjct 276 ATTTA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166664187370176