Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq19563 351 8e-92 seq19464 196 4e-45 >seq19563 Length=274849 Score = 351 bits (388), Expect = 8e-92 Identities = 1044/1588 (66%), Gaps = 67/1588 (4%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| ||||| | ||| || | ||| || | || |||||||| |||||| Sbjct 229898 TCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCCGGTC 229957 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 ||||| ||| ||| ||||||| |||||||| | ||| || ||||||| | || Sbjct 229958 TTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGTTTCA 230017 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | ||| | ||| | || ||||||||||||||| | |||||||| |||||||| Sbjct 230018 GCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGCCATC 230077 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAAT 65316 | |||||| | ||||||||| ||||| ||| | || || | | | | Sbjct 230078 TTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGA-GCAACTTAAGGTTTTT 230136 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA-TAATGCGATTACGCATCG 65375 |||||| |||| ||||||||| ||| | |||| ||| || || ||||||| Sbjct 230137 TGGAAT---GTCAAGCCTCTGGACTGACCCATTATAAGCAACCAATTCG-TTGCGCATCG 230192 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 |||| ||| | || || || | |||| || || | ||| |||||| ||||| | Sbjct 230193 ACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTTGAA 230252 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 |||| || || | || ||||| || |||| ||| ||||| | ||||||| Sbjct 230253 ACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATTCAT 230312 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG---- 65551 ||||||| ||||| ||||| || |||||||| ||||| || | |||| | ||| Sbjct 230313 TGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTG---CCAA-TAGGAGGCTA 230368 Query 65552 TTTCGCAATCCGTTCATTT--CAATGTTGTGACGCAATT----CGTCCCAGTTCCACATC 65605 || |||| || | |||| |||| || || || || |||||| ||| | Sbjct 230369 TTGCGCACACCAT--ATTTAGCAATCTT----AGCTTTTAGCGCGGCCCAGTCCCAAAGA 230422 Query 65606 GGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGC 65661 | | | | | ||| ||||||||| | ||||| | || ||||| ||| Sbjct 230423 G----AAC--TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGC 230476 Query 65662 CGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTC 65721 ||||| | || | || ||| || ||| |||| |||| | |||||| | || Sbjct 230477 ----GAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTC 230532 Query 65722 GAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCT 65781 | ||| | | || || ||||| || || || |||||||| ||| || || Sbjct 230533 CAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACT 230592 Query 65782 CTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGAT 65841 || |||| | || || | || ||||||||||| || ||||| |||||||| || || Sbjct 230593 GTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAAT 230652 Query 65842 GGGACGATGACGCAAATTGGAACG-TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 || |||||||| |||| | | ||| || || || || || ||||| || | ||||| Sbjct 230653 CGGTCGATGACGTTTATTGCTATGCTCT-GCTTCTGGAACTGGATAGTAGTTAACATCGA 230711 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATC 65958 |||| || | || |||||||| || | | || || | || | | || || Sbjct 230712 TAATCTTGTTGAGGTTTCGTGTCACAACTT--TAGTAACCTCTTTGAGTTTTCCAAAGTC 230769 Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 ||| | | || | | |||| | | ||| || || || || || Sbjct 230770 AAACT------TGCCTTC---ATT----GACAAAGCGA--TTG---AGTGCGAGTGACGC 230811 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 |||||||| || || || || ||||||| || |||||||| ||||| || || | ||| Sbjct 230812 AAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACTCGATTATTTCCGTACATAAATT 230871 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 | ||| || || || | ||| || ||||| ||||| | || || ||||| || || Sbjct 230872 AGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATA 230931 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 | ||||| || ||||| || |||| ||| || | ||||| | |||||| | Sbjct 230932 TAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCAAAGTTTCTG 230991 Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 || | ||| || | | || | |||||| || || |||||||| | |||||| Sbjct 230992 GGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAA 231051 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA-CACATCAGCGACCAAT 66317 | ||||| ||| ||| | ||||| ||| |||| ||||||| ||||| | Sbjct 231052 CTCCTTTCCCCAACAGTCGCTCAGCCCCGGACA-TTGATTGGAGCACATCAAAGACCACT 231110 Query 66318 CACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGAT 66377 |||| | || || ||||||||||| || ||||||| ||| ||| | ||||| |||| Sbjct 231111 GGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCAAAGGCCATAGAAAAGAT 231170 Query 66378 CGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437 | || |||| || || ||||| || ||| |||||||| |||||||| |||||||| | Sbjct 231171 CACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATAT 231230 Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497 |||||||||||||||||| ||||| || || | ||| | || || || |||| Sbjct 231231 CGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGT 231290 Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557 | || || || || || ||| | ||||| | ||| || || | || || ||| | | Sbjct 231291 CAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATGCCATTCGATGTTC 231350 Query 66558 CATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATAC 66617 | || ||||| | || ||||| | || ||| || | ||||| ||| | | Sbjct 231351 CGTTAGTGCCTGCTATATACGATCCGGCAGGTCGGATACAATGGATATTCATACCGACCC 231410 Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACA 66645 | || || | |||||| || |||||| Sbjct 231411 CGCCAGCAGACTTCGAAATAAGAGCACA 231438 >seq19464 Length=44290 Score = 196 bits (216), Expect = 4e-45 Identities = 446/667 (67%), Gaps = 13/667 (2%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || |||||| | |||||||||||||||||||| || ||||| ||||| ||| Sbjct 12696 CAAGAAGTACAAGTGCCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAATGATGGAAAAT 12637 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389 | || || || ||||| | |||| | | || ||||||| ||| |||||||| Sbjct 12636 ATTCATTCAGAAATGTATTCTCTTCTGCTAAACACATACATCACCGAGTCCACGGAACGT 12577 Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449 || ||| | ||| || || ||||| || || | ||| ||| || ||||||||| Sbjct 12576 GATCGACTCTTCCGCGCAATTGAGACAATGCCATGCATTAAGAAGAAGGCTGATTGGGCC 12517 Query 61450 TTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 || | |||||| | | || | | ||| | | ||||| || | ||||||| || | Sbjct 12516 TTAGAGTGGATCGCTA--ACGAGGAGGCTGCGTACGGTGAGCGTGTTGTGGCATTCGCTG 12459 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| || | |||||||| || |||||||||| || || ||| |||| || || | Sbjct 12458 CAGTCGAAGGCATTTTTTTCAGCGGGGCGTTTGCCGCTATTTTCTGGCTGAAAAAGCGAG 12399 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | | ||||| || || ||||||||||||||| | || ||||| ||||| || ||||| Sbjct 12398 GTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGACGAAGGTATGCACA 12339 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 || || || | || | ||||||| | ||| | || || || | ||| Sbjct 12338 CAGACTTCGCCTGTCTGATGTTCAAAC---ACCTGATCAACAAACCAAGCGAAGCGCGAA 12282 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 | | | || || || || || | |||||||| |||||||| ||||| || || | Sbjct 12281 TCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTCTCACTGAAGCATTAC 12222 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | ||| | | | || ||||| || | || ||| | || ||||| || ||||| | Sbjct 12221 CTGTCGCTATGTTGGGTATGAACTGCGATCTGATGAAGAGATACATTGAGTTCGTTGCTG 12162 Query 61808 ACCGTCTGTTGGTCGATTT---GGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864 | |||||| | |||| | | ||||| | | || | | || || || | Sbjct 12161 ATCGTCTGCTCATCGAGCTCAACTGCCAGAAGC---TATGGAAGTCCACGAATCCGTTCG 12105 Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924 | || ||||| ||||| || || ||||| |||||||| || || ||||| || || | Sbjct 12104 ACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTGAAAAACGCGTTGGTG 12045 Query 61925 ACTATCA 61931 | || || Sbjct 12044 AATACCA 12038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || |||||| || | || ||||| || ||| || ||||||| |||||| Sbjct 13264 GAGAACCCCAATCGTTTTGTGCTTTTTCCCATTGAATATTCCGACATTTGGCAAATGTAC 13205 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 |||||||| | || || || ||||| | ||||||||||||||| ||| |||||| | Sbjct 13204 AAAAAGGCACAGGCCTCTTTTTGGACCGCTGAGGAGGTCGATTTGGGCAAGGACATGTCT 13145 Query 61162 GACTGGGAGCGTTTATCGAGCGGT---GAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 |||||| || | || | || | | | ||||| ||||| | | ||||| Sbjct 13144 GACTGGAAGAACCGAATGAAACCTCAGGAGCGAGAATTCATCAAACACATTCTTGCGTTT 13085 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||||| ||||| || || || || || |||||| Sbjct 13084 TTTGCTGCTTCTGATGGCATTGTGAACGAGAAT 13052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397468922078720