Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 351 8e-92
seq19464 196 4e-45
>seq19563
Length=274849
Score = 351 bits (388), Expect = 8e-92
Identities = 1044/1588 (66%), Gaps = 67/1588 (4%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || |||||||| ||||| | ||| || | ||| || | || |||||||| ||||||
Sbjct 229898 TCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCCGGTC 229957
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
||||| ||| ||| ||||||| |||||||| | ||| || ||||||| | ||
Sbjct 229958 TTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGTTTCA 230017
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | ||| | ||| | || ||||||||||||||| | |||||||| ||||||||
Sbjct 230018 GCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGCCATC 230077
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGT-ACCTCAAT 65316
| |||||| | ||||||||| ||||| ||| | || || | | | |
Sbjct 230078 TTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGA-GCAACTTAAGGTTTTT 230136
Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA-TAATGCGATTACGCATCG 65375
|||||| |||| ||||||||| ||| | |||| ||| || || |||||||
Sbjct 230137 TGGAAT---GTCAAGCCTCTGGACTGACCCATTATAAGCAACCAATTCG-TTGCGCATCG 230192
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|||| ||| | || || || | |||| || || | ||| |||||| ||||| |
Sbjct 230193 ACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTTGAA 230252
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
|||| || || | || ||||| || |||| ||| ||||| | |||||||
Sbjct 230253 ACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATTCAT 230312
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG---- 65551
||||||| ||||| ||||| || |||||||| ||||| || | |||| | |||
Sbjct 230313 TGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTG---CCAA-TAGGAGGCTA 230368
Query 65552 TTTCGCAATCCGTTCATTT--CAATGTTGTGACGCAATT----CGTCCCAGTTCCACATC 65605
|| |||| || | |||| |||| || || || || |||||| ||| |
Sbjct 230369 TTGCGCACACCAT--ATTTAGCAATCTT----AGCTTTTAGCGCGGCCCAGTCCCAAAGA 230422
Query 65606 GGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC----GATACTGGC 65661
| | | | | ||| ||||||||| | ||||| | || ||||| |||
Sbjct 230423 G----AAC--TGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGATACAGGC 230476
Query 65662 CGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTC 65721
||||| | || | || ||| || ||| |||| |||| | |||||| | ||
Sbjct 230477 ----GAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTC 230532
Query 65722 GAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCT 65781
| ||| | | || || ||||| || || || |||||||| ||| || ||
Sbjct 230533 CAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACT 230592
Query 65782 CTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGAT 65841
|| |||| | || || | || ||||||||||| || ||||| |||||||| || ||
Sbjct 230593 GTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAAT 230652
Query 65842 GGGACGATGACGCAAATTGGAACG-TCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900
|| |||||||| |||| | | ||| || || || || || ||||| || | |||||
Sbjct 230653 CGGTCGATGACGTTTATTGCTATGCTCT-GCTTCTGGAACTGGATAGTAGTTAACATCGA 230711
Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATC 65958
|||| || | || |||||||| || | | || || | || | | || ||
Sbjct 230712 TAATCTTGTTGAGGTTTCGTGTCACAACTT--TAGTAACCTCTTTGAGTTTTCCAAAGTC 230769
Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018
||| | | || | | |||| | | ||| || || || || ||
Sbjct 230770 AAACT------TGCCTTC---ATT----GACAAAGCGA--TTG---AGTGCGAGTGACGC 230811
Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078
|||||||| || || || || ||||||| || |||||||| ||||| || || | |||
Sbjct 230812 AAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACTCGATTATTTCCGTACATAAATT 230871
Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138
| ||| || || || | ||| || ||||| ||||| | || || ||||| || ||
Sbjct 230872 AGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATA 230931
Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198
| ||||| || ||||| || |||| ||| || | ||||| | |||||| |
Sbjct 230932 TAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCAAAGTTTCTG 230991
Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258
|| | ||| || | | || | |||||| || || |||||||| | ||||||
Sbjct 230992 GGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAA 231051
Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA-CACATCAGCGACCAAT 66317
| ||||| ||| ||| | ||||| ||| |||| ||||||| ||||| |
Sbjct 231052 CTCCTTTCCCCAACAGTCGCTCAGCCCCGGACA-TTGATTGGAGCACATCAAAGACCACT 231110
Query 66318 CACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGAT 66377
|||| | || || ||||||||||| || ||||||| ||| ||| | ||||| ||||
Sbjct 231111 GGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCAAAGGCCATAGAAAAGAT 231170
Query 66378 CGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437
| || |||| || || ||||| || ||| |||||||| |||||||| |||||||| |
Sbjct 231171 CACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATAT 231230
Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497
|||||||||||||||||| ||||| || || | ||| | || || || ||||
Sbjct 231231 CGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGT 231290
Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557
| || || || || || ||| | ||||| | ||| || || | || || ||| | |
Sbjct 231291 CAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATGCCATTCGATGTTC 231350
Query 66558 CATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATAC 66617
| || ||||| | || ||||| | || ||| || | ||||| ||| | |
Sbjct 231351 CGTTAGTGCCTGCTATATACGATCCGGCAGGTCGGATACAATGGATATTCATACCGACCC 231410
Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACA 66645
| || || | |||||| || ||||||
Sbjct 231411 CGCCAGCAGACTTCGAAATAAGAGCACA 231438
>seq19464
Length=44290
Score = 196 bits (216), Expect = 4e-45
Identities = 446/667 (67%), Gaps = 13/667 (2%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| || || |||||| | |||||||||||||||||||| || ||||| ||||| |||
Sbjct 12696 CAAGAAGTACAAGTGCCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAATGATGGAAAAT 12637
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389
| || || || ||||| | |||| | | || ||||||| ||| ||||||||
Sbjct 12636 ATTCATTCAGAAATGTATTCTCTTCTGCTAAACACATACATCACCGAGTCCACGGAACGT 12577
Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449
|| ||| | ||| || || ||||| || || | ||| ||| || |||||||||
Sbjct 12576 GATCGACTCTTCCGCGCAATTGAGACAATGCCATGCATTAAGAAGAAGGCTGATTGGGCC 12517
Query 61450 TTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507
|| | |||||| | | || | | ||| | | ||||| || | ||||||| || |
Sbjct 12516 TTAGAGTGGATCGCTA--ACGAGGAGGCTGCGTACGGTGAGCGTGTTGTGGCATTCGCTG 12459
Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567
||||| || | |||||||| || |||||||||| || || ||| |||| || || |
Sbjct 12458 CAGTCGAAGGCATTTTTTTCAGCGGGGCGTTTGCCGCTATTTTCTGGCTGAAAAAGCGAG 12399
Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627
| | ||||| || || ||||||||||||||| | || ||||| ||||| || |||||
Sbjct 12398 GTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGACGAAGGTATGCACA 12339
Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687
|| || || | || | ||||||| | ||| | || || || | |||
Sbjct 12338 CAGACTTCGCCTGTCTGATGTTCAAAC---ACCTGATCAACAAACCAAGCGAAGCGCGAA 12282
Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747
| | | || || || || || | |||||||| |||||||| ||||| || || |
Sbjct 12281 TCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTCTCACTGAAGCATTAC 12222
Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807
| ||| | | | || ||||| || | || ||| | || ||||| || ||||| |
Sbjct 12221 CTGTCGCTATGTTGGGTATGAACTGCGATCTGATGAAGAGATACATTGAGTTCGTTGCTG 12162
Query 61808 ACCGTCTGTTGGTCGATTT---GGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864
| |||||| | |||| | | ||||| | | || | | || || || |
Sbjct 12161 ATCGTCTGCTCATCGAGCTCAACTGCCAGAAGC---TATGGAAGTCCACGAATCCGTTCG 12105
Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924
| || ||||| ||||| || || ||||| |||||||| || || ||||| || || |
Sbjct 12104 ACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTGAAAAACGCGTTGGTG 12045
Query 61925 ACTATCA 61931
| || ||
Sbjct 12044 AATACCA 12038
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/213 (70%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
||||| || |||||| || | || ||||| || ||| || ||||||| ||||||
Sbjct 13264 GAGAACCCCAATCGTTTTGTGCTTTTTCCCATTGAATATTCCGACATTTGGCAAATGTAC 13205
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161
|||||||| | || || || ||||| | ||||||||||||||| ||| |||||| |
Sbjct 13204 AAAAAGGCACAGGCCTCTTTTTGGACCGCTGAGGAGGTCGATTTGGGCAAGGACATGTCT 13145
Query 61162 GACTGGGAGCGTTTATCGAGCGGT---GAACAACATTTCATTAAACATGTGTTGGCGTTC 61218
|||||| || | || | || | | | ||||| ||||| | | |||||
Sbjct 13144 GACTGGAAGAACCGAATGAAACCTCAGGAGCGAGAATTCATCAAACACATTCTTGCGTTT 13085
Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251
||||| ||||| || || || || || ||||||
Sbjct 13084 TTTGCTGCTTCTGATGGCATTGTGAACGAGAAT 13052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397468922078720
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