Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq19061 316 5e-82 >seq19061 Length=15585 Score = 316 bits (350), Expect = 5e-82 Identities = 289/365 (79%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 |||||| | ||||| | |||||||| || ||| || |||||| |||||||||| ||| Sbjct 14206 GACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCG 14147 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 |||| || |||||||| ||||||||||||||||| ||||| || || |||||| ||| Sbjct 14146 ACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAG 14087 Query 12295 GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCC 12354 | ||||||||||||||||| || ||||||||| |||||||| | | ||||| |||||| Sbjct 14086 ACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCC 14027 Query 12355 GCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTC 12414 || |||||||| |||||| || | ||||| |||| |||||||| ||||||| |||| Sbjct 14026 GCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACCGGCAGGCTC 13967 Query 12415 AAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTC 12474 ||| ||| | | |||||| || ||||| ||||||||||||||| |||| || || ||| Sbjct 13966 AAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTC 13907 Query 12475 GACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCCACCGTGAACAAGGCCAACCGCGGC 12534 ||||||||||| || ||| |||||| ||||||| | |||||| ||| |||||| Sbjct 13906 GACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGAACCGCGCCGCGCGCGGC 13847 Query 12535 GGGGG 12539 || || Sbjct 13846 GGCGG 13842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126164557281536