Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_029594.1
Length=4301
Score E
Sequences producing significant alignments: (Bits) Value
seq18992 131 5e-27
seq19503 127 6e-26
seq4378 80.6 7e-12
seq5653 77.0 9e-11
>seq18992
Length=242700
Score = 131 bits (144), Expect = 5e-27
Identities = 136/176 (77%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 747 CAAGAGGCGAATGGTGGGATGGTTATTGTGGTAACAATGGTGTTATTATTGATGATTTTT 806
||||||| ||||||||||| ||||| ||| |||| | ||||| |||||||||||||
Sbjct 24865 CAAGAGGAGAATGGTGGGACGGTTACTGTAACCACAAAGCCGTTATAATTGATGATTTTT 24806
Query 807 ATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGATAGATATCCTTATAGGGTTC 866
|||| ||| | |||| || ||| | || ||||| |||||||||| || |||| || |
Sbjct 24805 ATGGTTGGCTCAAATACGATGAATTATTAAAAATAGCAGATAGATACCCCTATAAAGTCC 24746
Query 867 CCATTAAAGGCGGTTACGAGAATTTTTGTAGCAAAAT-TATTATCATTACTTCGAA 921
|||||||||| ||| | |||||||| |||| ||| ||| |||| ||||| ||
Sbjct 24745 CCATTAAAGGAAGTTTTGCGAATTTTT-TAGCTGAATGGATTTTCATAACTTCTAA 24691
>seq19503
Length=119187
Score = 127 bits (140), Expect = 6e-26
Identities = 106/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 747 CAAGAGGCGAATGGTGGGATGGTTATTGTGGTAACAATGGTGTTATTATTGATGATTTTT 806
|| |||| ||||||||||||||||||||| |||| | |||||||| ||||||||||
Sbjct 25441 CACGAGGTGAATGGTGGGATGGTTATTGTAACCACAAAGCAGTTATTATAGATGATTTTT 25382
Query 807 ATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGATAGATATCCTTATAGGGTTC 866
|||| ||||| |||| ||| ||| | | ||||| | |||||||||||||||| |||||
Sbjct 25381 ATGGGTGGTTAAAATATGATGAATTACTTAAAATATGTGATAGATATCCTTATAAGGTTC 25322
Query 867 CCATTAAAGG 876
| || |||||
Sbjct 25321 CTATCAAAGG 25312
>seq4378
Length=189284
Score = 80.6 bits (88), Expect = 7e-12
Identities = 85/112 (76%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 780 ACAATGGTGTTATTATTGATGATTTTTATGGATGGTTGAAATTTGACGAACTTTTGAAAA 839
|||| | ||| || || || || ||||| |||||| | |||| |||||| ||||||||||
Sbjct 29494 ACAAAGCTGTCATAATGGACGACTTTTACGGATGGCTCAAATATGACGAGCTTTTGAAAA 29553
Query 840 TTTCAGATAGATATCCTTATAGGGTTCCCATTAAAGGCGGTTACGAGAATTT 891
| | ||| | ||||| |||| ||||| || ||||| ||| | ||||||
Sbjct 29554 TAGCTGATCGGTATCCCTATAAAGTTCCAATAAAAGGGAGTTTTGCGAATTT 29605
>seq5653
Length=48260
Score = 77.0 bits (84), Expect = 9e-11
Identities = 100/136 (74%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 788 GTTATTATTGATGATTTTTATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGAT 847
|| || || || || |||||||||||| | |||| ||| ||| | | ||||| ||||||
Sbjct 23973 GTCATCATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGAT 24032
Query 848 AGATATCCTTATAGGGTTCCCATTAAAGGCGGTTACGAGAATTTTTGTAGCAAAAT-TAT 906
|||| ||||| |||||| || ||||| |||| | || |||||| || | | ||
Sbjct 24033 CGATACCCTTACCAGGTTCCGATCAAAGGAGGTTTTGCCAA-TTTTGTTTCAGATTGGAT 24091
Query 907 TATCATTACTTCGAAC 922
| |||||| ||| |||
Sbjct 24092 TTTCATTATTTCCAAC 24107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13648146909120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |