Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_029594.1 Length=4301 Score E Sequences producing significant alignments: (Bits) Value seq18992 131 5e-27 seq19503 127 6e-26 seq4378 80.6 7e-12 seq5653 77.0 9e-11 >seq18992 Length=242700 Score = 131 bits (144), Expect = 5e-27 Identities = 136/176 (77%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 747 CAAGAGGCGAATGGTGGGATGGTTATTGTGGTAACAATGGTGTTATTATTGATGATTTTT 806 ||||||| ||||||||||| ||||| ||| |||| | ||||| ||||||||||||| Sbjct 24865 CAAGAGGAGAATGGTGGGACGGTTACTGTAACCACAAAGCCGTTATAATTGATGATTTTT 24806 Query 807 ATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGATAGATATCCTTATAGGGTTC 866 |||| ||| | |||| || ||| | || ||||| |||||||||| || |||| || | Sbjct 24805 ATGGTTGGCTCAAATACGATGAATTATTAAAAATAGCAGATAGATACCCCTATAAAGTCC 24746 Query 867 CCATTAAAGGCGGTTACGAGAATTTTTGTAGCAAAAT-TATTATCATTACTTCGAA 921 |||||||||| ||| | |||||||| |||| ||| ||| |||| ||||| || Sbjct 24745 CCATTAAAGGAAGTTTTGCGAATTTTT-TAGCTGAATGGATTTTCATAACTTCTAA 24691 >seq19503 Length=119187 Score = 127 bits (140), Expect = 6e-26 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 747 CAAGAGGCGAATGGTGGGATGGTTATTGTGGTAACAATGGTGTTATTATTGATGATTTTT 806 || |||| ||||||||||||||||||||| |||| | |||||||| |||||||||| Sbjct 25441 CACGAGGTGAATGGTGGGATGGTTATTGTAACCACAAAGCAGTTATTATAGATGATTTTT 25382 Query 807 ATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGATAGATATCCTTATAGGGTTC 866 |||| ||||| |||| ||| ||| | | ||||| | |||||||||||||||| ||||| Sbjct 25381 ATGGGTGGTTAAAATATGATGAATTACTTAAAATATGTGATAGATATCCTTATAAGGTTC 25322 Query 867 CCATTAAAGG 876 | || ||||| Sbjct 25321 CTATCAAAGG 25312 >seq4378 Length=189284 Score = 80.6 bits (88), Expect = 7e-12 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 780 ACAATGGTGTTATTATTGATGATTTTTATGGATGGTTGAAATTTGACGAACTTTTGAAAA 839 |||| | ||| || || || || ||||| |||||| | |||| |||||| |||||||||| Sbjct 29494 ACAAAGCTGTCATAATGGACGACTTTTACGGATGGCTCAAATATGACGAGCTTTTGAAAA 29553 Query 840 TTTCAGATAGATATCCTTATAGGGTTCCCATTAAAGGCGGTTACGAGAATTT 891 | | ||| | ||||| |||| ||||| || ||||| ||| | |||||| Sbjct 29554 TAGCTGATCGGTATCCCTATAAAGTTCCAATAAAAGGGAGTTTTGCGAATTT 29605 >seq5653 Length=48260 Score = 77.0 bits (84), Expect = 9e-11 Identities = 100/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 788 GTTATTATTGATGATTTTTATGGATGGTTGAAATTTGACGAACTTTTGAAAATTTCAGAT 847 || || || || || |||||||||||| | |||| ||| ||| | | ||||| |||||| Sbjct 23973 GTCATCATCGACGACTTTTATGGATGGATTAAATATGATGAATTACTCAAAATATCAGAT 24032 Query 848 AGATATCCTTATAGGGTTCCCATTAAAGGCGGTTACGAGAATTTTTGTAGCAAAAT-TAT 906 |||| ||||| |||||| || ||||| |||| | || |||||| || | | || Sbjct 24033 CGATACCCTTACCAGGTTCCGATCAAAGGAGGTTTTGCCAA-TTTTGTTTCAGATTGGAT 24091 Query 907 TATCATTACTTCGAAC 922 | |||||| ||| ||| Sbjct 24092 TTTCATTATTTCCAAC 24107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13648146909120