Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3870 325 7e-87 seq12587 316 3e-84 seq12297 87.8 3e-15 seq13240 86.0 1e-14 seq13027 78.8 2e-12 >seq3870 Length=1483 Score = 325 bits (360), Expect = 7e-87 Identities = 244/283 (86%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 628 TACTGAGCAGGATTACTATCGCAATGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 569 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || ||||||||||||||| |||||| || Sbjct 568 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGTGGGTGAACAATCCGACGCTTGGCG 509 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 508 AATTCTGCTTCGCAATGATAGGAAGAACCGACATCGAAGGATCAAAAAGCGACGTCGCTA 449 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 448 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTTTTGCT 389 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||| ||||||||||| ||||| Sbjct 388 GAAAACTCTTCAA--GCCAAAAGAATCGATAGGCCGTGCTTTC 348 >seq12587 Length=19744 Score = 316 bits (350), Expect = 3e-84 Identities = 242/283 (86%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| | |||||||||||||||||||||||||||| Sbjct 6349 TACTGAGCAGGATTACTATCGCAATGACGAGCCATCAGTAGGGTAAAACTAACCTGTCTC 6408 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||| |||||| || | ||||||||||||| |||||| || Sbjct 6409 ACGACGGTCTAAACCCAGCTCACCTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 6468 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 6469 AATTCTGCTTCGCAATGATAGGAAGAACCGACATCGAAGGATCAAAAAGCGACGTCGCTG 6528 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 6529 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 6588 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 6589 GGAAACGCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 6629 >seq12297 Length=18639 Score = 87.8 bits (96), Expect = 3e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 4568 TACTGAGCAGGATTACTATCGCAATGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 4627 Query 60 ATGACGGTCTAAACCCAG 77 | |||||||||||||||| Sbjct 4628 ACGACGGTCTAAACCCAG 4645 >seq13240 Length=2589821 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/127 (75%), Gaps = 21/127 (17%) Strand=Plus/Plus Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 342634 GCCGACATCGAAAGATCAAAAAGCGACGTCGC-----------------CACAAGCCAGT 342676 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 |||||| |||||||| |||||| ||||||| | || ||| || | | | ||||||||| Sbjct 342677 TATCCCCGTGGTAAC-TTTCTGACACCTCTTG-CTGAAAACTCAA--GCCAAAAGGATCG 342732 Query 266 ATAGGCC 272 ||||||| Sbjct 342733 ATAGGCC 342739 >seq13027 Length=117870 Score = 78.8 bits (86), Expect = 2e-12 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT-TCCCTATTAGTGGGTGAAC 103 |||| | |||||||| |||| |||||||||| ||||||| || || ||| | || |||| Sbjct 17605 AAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTATCACT-TTAATCGGCGAAC 17547 Query 104 AATCCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 | | ||| ||| ||| ||| ||| | | ||| || ||| ||||||||| | Sbjct 17546 AGCCGAACCCTTGGGACCTTCTTCAGCTCCAGGATGT---GATGAGTCGACATCGAGGTG 17490 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 |||| | ||||||||||||||| | ||| |||| |||||||| | ||| | Sbjct 17489 CCAAACGGTGTTGTCGCTATGAACGCTCGAACACCATCAGCCTGTTATCCCCGGCGTACC 17430 Query 221 TTTT 224 |||| Sbjct 17429 TTTT 17426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854286723648