Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028482.1 Length=11877 Score E Sequences producing significant alignments: (Bits) Value seq13101 123 2e-24 >seq13101 Length=323720 Score = 123 bits (136), Expect = 2e-24 Identities = 390/592 (66%), Gaps = 18/592 (3%) Strand=Plus/Plus Query 1829 TAGATGCCTCGTCTTGGTGTAACCATTTCAGACCAGAAACTGTAGACGATGCGATGGCTC 1888 ||||||| || |||| |||| || ||| || ||| || || || | ||| || Sbjct 297230 TAGATGCATCAAGTTGGAATAACAGATTTAGATCATTAACAGTGGATGAACCAATGTATC 297289 Query 1889 CGACCCTAGATAAGATATATGGGACCAATATATTCTCGAAAACACACCTTGCGTACAACA 1948 || |||||| | |||| ||| |||| || ||||| |||||||| | || || | | Sbjct 297290 ATACTCTAGATGATATATTTGGAACCAGAATTTTCTCTAAAACACATATAGCATATGAAA 297349 Query 1949 AGACACTATAT-TATGTCCCAGACGAGTCTGGAACATACTACTGGCATGGTCAAGATGGA 2007 | | || ||| ||||| || || || | || || || ||| |||| || |||| Sbjct 297350 AAAG-CTTTATATATGTTCCTGATGAAAAGGACACTTATTATTGGAATGGACAGTGTGGA 297408 Query 2008 GGAATTGAAGGCCTTAATCAAGACACATGGGTGGTGGTTTACATCAGCCAAATCAAGACC 2067 || || ||||| | |||||||| |||||||| || ||| | | ||||| ||| | Sbjct 297409 GGTATCGAAGGGTTAAATCAAGATACATGGGTAGTTACATACTTGGGGCAAATTAAGTCT 297468 Query 2068 GCGTTTAGCGGAATGTCTATCCGA-TACACGGTTCTCTGTAAGGGTGATGATTGTCG--- 2123 || | | | || || | | || ||||||||||| || |||||| | Sbjct 297469 GCCATGAAACCATTGGG-ATACAACTATTATGTTCTCTGTAAAGGAGATGATGTAAGAAT 297527 Query 2124 TGTGGTTTTAAGTATCCCCTATAGAGAAATCGAAAATGGAGACGTTGCCGGATTCAAAAA 2183 || | |||||| || | || ||| ||| ||| || |||| | |||| || Sbjct 297528 TGCGATTTTAA-TACCACCAATATTAGTATCACAAAACCAG---TTGC---ACTCAATAA 297580 Query 2184 TAA-AATTGTTCAGAGAC-TCTC--AGAAACAGCGAGTTCATTAGGTCATAAGATTAAAA 2239 || || | | || || ||| ||| || || ||||| || || |||||||| | Sbjct 297581 AAACAAGTATAGTGAAACATCTTCAAGACTCATTGAAATCATTTGGACACAAGATTAAGA 297640 Query 2240 TTCTGGATAGTTACGGATCCGAGACTTACTTCAATTTCTCCAAAACTGCTTCAGTCGGAT 2299 | || ||||| || || || ||||| |||||||| ||| | |||||| | || Sbjct 297641 TAGCAGAAAGTTATGGTTCTGAATTATACTTTAATTTCTCTAAATCAGCTTCAATAGGTA 297700 Query 2300 ATATAGAACTCCCTCAGACGTTCCGTAAGATTCAGAAATGCTATGGTGCAAATAATGCCT 2359 ||||| || ||||| | | | || ||||| |||| |||||||||||||||||| Sbjct 297701 CAATAGAGCTACCTCAAGTCTACAGAAAAATTCAAAAATCACATGGTGCAAATAATGCCT 297760 Query 2360 TCATACCAACAATGGACGAGTATATCGCCAGCACGTTCAGTAATGCACACAG 2411 | || |||| | || || ||||| || ||| | ||||||||||| || || Sbjct 297761 TTATTTCAACGCTAGATGAATATATTGCAAGCGCATTCAGTAATGCTCATAG 297812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37885548432792