Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq323 453 4e-125 seq13428 111 5e-22 seq2346 86.0 2e-14 seq3729 80.6 9e-13 >seq323 Length=8557 Score = 453 bits (502), Expect = 4e-125 Identities = 325/375 (87%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| || || | ||||||| |||| ||||| |||||||||||||| | || Sbjct 7204 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAT 7145 Query 228 ----CCGAA-----ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 ||||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 7144 CAAACCGAAGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 7085 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 7084 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 7025 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 7024 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATG 6965 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6964 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 6905 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6904 CCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 6845 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 6844 CACATTGTGTCAACA 6830 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 7509 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 7450 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 7449 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 7403 >seq13428 Length=7822 Score = 111 bits (122), Expect = 5e-22 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||| ||||||| |||||||| |||||||||||||||| || |||||||||||| ||| Sbjct 7693 GATAAGGACAGTAGGAATCTCTTTAATCCATTCATGCGAGTTTCTAATTAGATGAAAAGG 7752 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTT 451 ||||||||||||||||||||| | || || Sbjct 7753 CATTTGGCTACCTTAAGAGAGACTTAATT 7781 >seq2346 Length=12268 Score = 86.0 bits (94), Expect = 2e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 |||||||||||||| || ||||||||||||| |||| |||||||||||||||||||| | Sbjct 12045 AATCCATTCATGCGAGTTACTAATTAGATGAAGAGGAATTTGGCTACCTTAAGAGAGACT 11986 Query 447 TAGTT 451 || || Sbjct 11985 TAATT 11981 >seq3729 Length=3343 Score = 80.6 bits (88), Expect = 9e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 3292 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATT 3343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634414008416