Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq323 423 6e-116 seq11592 107 6e-21 seq3025 84.2 7e-14 >seq323 Length=8557 Score = 423 bits (468), Expect = 6e-116 Identities = 411/519 (79%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 1727 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 1668 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1667 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 1608 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1607 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 1548 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 1547 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 1488 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGAGCCCCGA-----AG 291 | |||| |||| ||| || | ||||| || ||| | | | | ||| | Sbjct 1487 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCA-GTGTAACGATCTTGCG 1430 Query 292 GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTT--TAGCAT 347 || | | |||| |||||||| ||| | |||| || ||| | ||||| | |||| Sbjct 1429 ATCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCAAAAGGTCCGTGTTTTAGTTGCAT 1370 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGA 405 |||||||||||||||||||||| |||||||| ||| | || || ||| || ||| | Sbjct 1369 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCA 1312 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||| ||||||||| || || |||||||| | || | | | ||||||||||||| Sbjct 1311 TAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGC 1253 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| ||||||||||| Sbjct 1252 ATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 1214 >seq11592 Length=762 Score = 107 bits (118), Expect = 6e-21 Identities = 90/109 (83%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || ||| || ||| ||||||||| ||||| ||| || || |||||||| | || | | Sbjct 15 ACGATCTAAGGAACCATAACTGATATAATGCGCCTTTTGCGGTTTCACTTT-TAATTCGT 73 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 | |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 74 GTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTAC 122 >seq3025 Length=13232 Score = 84.2 bits (92), Expect = 7e-14 Identities = 87/112 (78%), Gaps = 9/112 (8%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||||| |||||||||||| |||||||| ||| || ||| || |||| Sbjct 12362 CATGTATTAGCTGTAGAATTACCACAGTTATCCAAGTA-------ACGATCTAAGAAAC- 12311 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||||| |||||||| || || |||||||| | || | | ||||||| Sbjct 12310 ATAACTGATATAATGAGCACTTTGCGGTTTCACT-TTTAATTCGTTTATACT 12260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509673996032