Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq71 636 1e-177 seq7 311 7e-80 >seq71 Length=1348405 Score = 636 bits (704), Expect = 1e-177 Identities = 1231/1802 (68%), Gaps = 45/1802 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCC-TAAGATAGTACATGCCGGT 65136 || || ||||| || || ||||| || || | ||| || | |||| || |||||||| || Sbjct 494643 TCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAG-TAATACATGCCCGT 494701 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||| || || |||| |||| || || || || | | || |||| || ||||| Sbjct 494702 TTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGCTC 494761 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||||| || ||||| ||||| || || ||||||||| | ||||||||||||||||| Sbjct 494762 GGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCCAT 494821 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | | || | || |||||||| || ||||||||||| |||| | Sbjct 494822 TTTGATGG-AGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATGTT 494880 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 | || || ||||||| || | ||||||||| ||| |||||| ||| ||| Sbjct 494881 TCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCATAT 494940 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || |||||||||||| ||| | |||| | | ||||||| |||||| ||||||| Sbjct 494941 CATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAACTTGGA 495000 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || || || |||||||| ||| || || || ||| |||||||| || ||| Sbjct 495001 ATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTCAT 495060 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | ||||| | |||||| || ||||| ||||||||||| || || | |||||||||||| | Sbjct 495061 TATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGC 495120 Query 65556 GCAATCC--GTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTA 65611 | | || ||| ||| || || | ||||||| ||||||||| | || ||| Sbjct 495121 GTACACCATGTTGCTTT--ATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTTGG 495178 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 ||| |||| ||||| || | ||| || | || | ||| | |||||||| Sbjct 495179 -CGTTTT-ATCC------CACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCT 495230 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | ||||| || | | | || | || ||| |||| || | |||| || Sbjct 495231 TCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCA 495290 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT--GCCTCATCGCTCTCGTACG 65789 | ||||| || ||||| || || |||| | || || |||||||| || ||||| | Sbjct 495291 TAGTAAATAGTTTCGAATATTTGTTGATTCAA--CAAGTATGCCTCATCACTTTCGTATG 495348 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | | || ||| | | || | |||||| | |||||| | |||||||| |||||||||| Sbjct 495349 GAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGAT 495408 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 | |||||||| || | ||||| |||| || || | ||||| || || || | Sbjct 495409 GTCGCAAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGT 495468 Query 65910 TCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAG 65969 ||||||| || || || | | || | | ||| || ||| | |||| Sbjct 495469 TCAAATTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTTAAAGTCATACGTTTTA- 495527 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 || || ||| ||| || || | || | || || | ||||| | Sbjct 495528 -----TCTGGTGTG---------ACATACATGTTCAATGCTATTGAGGCTAAATTGCAAA 495573 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 |||||| |||||| || |||| ||| || ||||||||||| |||| |||||| || | Sbjct 495574 CAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAA 495633 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 | ||||| | |||||| ||||||||||| | |||||| ||||| || |||| |||||||| Sbjct 495634 TCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACG 495693 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | ||||||||||| || || || ||||| ||||| ||||||| |||| || ||| Sbjct 495694 GTGTGCCGGTCTCTACCTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTAACCT 495753 Query 66210 TACGTACC-GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | | || || | |||| |||| || | || || | | ||||| ||||||| Sbjct 495754 T-CTTATTAGCACGTCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCC 495812 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 |||||||| | || |||||||| ||||||||||| |||||||| || |||| | Sbjct 495813 CATACTTCATGTAAACCCGGACACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCT 495872 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || ||||| |||||||||||||| |||||||| | ||| ||||| | ||| | ||| || Sbjct 495873 TCGACACGTCGCATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGA 495932 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 ||||| || |||| |||||| ||| || | ||||| || | ||| ||||||||| Sbjct 495933 TGCTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCAT 495992 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 |||||||| |||||||| || | ||| ||| || ||||||||||| || || || || Sbjct 495993 GGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGT 496052 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 || ||||| || || || | || ||| || || | || || || ||||||| || || Sbjct 496053 GCCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCC 496112 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 | || | | ||| || ||||| || ||||||| ||||||||| || || | Sbjct 496113 GCAATTGCAGTGCCTTTCGCGCGTATGCAATGCACATTCAAACCAATACCGCCTGCAGAT 496172 Query 66629 TTCGAGATGGCAGCACA---ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCC 66685 || ||||| ||||| || ||| ||| ||| || |||||||| || || || Sbjct 496173 TTGGAGATCAATGCACAGTGATGTGCCGATGT---GAAAATACCGTCAATTGAATCGTCC 496229 Query 66686 TTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGG 66745 ||||| || || |||| || | ||| |||| ||||| || | ||| || Sbjct 496230 ACCATGGTAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGC 496289 Query 66746 GTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCA 66805 || |||| || || ||||| ||| | ||| | | ||||| || || || | ||| Sbjct 496290 GTTGGTGAGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCA 496349 Query 66806 TCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 ||||| | ||| ||||| || |||| ||| ||||| | | || ||| || || || Sbjct 496350 TCAATATCTTCACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCA 496409 Query 66866 AC 66867 || Sbjct 496410 AC 496411 >seq7 Length=4380649 Score = 311 bits (344), Expect = 7e-80 Identities = 506/725 (70%), Gaps = 5/725 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| || || ||||| || ||||| || ||| | || ||||| ||| |||| | Sbjct 4095270 AGGCAGAAGCGTCGTTTTGGACAGTTGAGGAAGTGGATCTTTCTAAAGATATGGATGATT 4095211 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| ||| | | | ||||| |||||||| ||| || || || || ||||||| Sbjct 4095210 GGGCACGTCTCACTGACAATGAACGGCATTTCATCTCACACGTATTAGCCTTTTTTGCCG 4095151 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || ||||| || |||||||||||| | ||||| ||| |||||||| ||||| Sbjct 4095150 CATCTGATGGTATTGTTAATGAGAATTTAGTTGAACGATTCAGTCAGGAGGTCCAAGTTA 4095091 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | ||||| ||||||||||| || || || ||||| |||||||| || || || || |||| Sbjct 4095090 CAGAGGCACGTTGTTTCTATGGATTTCAAATTGCTATGGAGAACGTGCATTCCGAAATGT 4095031 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAAT 61404 | ||| | | |||||||| || || | ||| | || | |||| | || |||||| Sbjct 4095030 ATAGTATATTAATCGATACATATATTAAGGATTCGAAACAAAG-GAACTATTTATTCAAT 4094972 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || || || ||||| || || || ||||| || || |||||||| | |||||| || Sbjct 4094971 GCTATTGAAACGATGCCTGCCGTAAAGCGTAAGGCAGATTGGGCACTTGCTTGGATTTCC 4094912 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | |||| | ||||||||||| | | |||||||| | || || ||| | ||| Sbjct 4094911 TCAAAGTCGGCAAACTTTGGTGAACGTGTAATTGCATTTGCAGCTGTGGAAGGTATTTTT 4094852 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||||||||| ||||| | ||||| ||| | || |||||||| | ||||| || | Sbjct 4094851 TTCAGTGGAAGTTTTGCGTCGATCTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGCTTA 4094792 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 || || ||||||| | || ||||| |||||||| ||||||||||||| || |||| Sbjct 4094791 ACGTTTTCCAATGAGCTAATCTCACGAGACGAGGGTCTGCATTGTGATTTCGCATGTTTG 4094732 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 | || ||| || || | | || | || || | ||| || || Sbjct 4094731 ATGTTTCAAC---ATTTGATACAGAAGCCAAGTAATGAACGAATTATTGAAATCATTTCC 4094675 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || | || || || ||||| | ||||||||||||||||| | || || Sbjct 4094674 GAAGCTGTTAAAATTGAGCAAGAATTCTTAACTGACGCTTTGCCCGTAAATTTAATTGGT 4094615 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 |||||||| | |||||| | ||||| |||||||| || || || |||| ||||| Sbjct 4094614 ATGAATTGCAAATCAATGTCCGATTATATAGAATTTGTGGCTGATCGCTTGTTAGTCGAG 4094555 Query 61825 TTGGG 61829 |||| Sbjct 4094554 CTGGG 4094550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541001654080