Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq40 84.2 8e-11 >seq40 Length=2204548 Score = 84.2 bits (92), Expect = 8e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 364424 CCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCG 364483 ||||| ||||||||||| ||||||| | |||||||||| || ||||||||| | | || Sbjct 529871 CCAATTGTCATACGAGATGGAATGGCGTGAGGGTTGATAATAATGTCAGGCGCAAGCCCC 529812 Query 364484 TCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 ||| ||||| | ||| ||||| || || || |||| || ||||| || | Sbjct 529811 TCACATGTAAACGCCATGTCTTCTTGACGATACTGGATACCACAAGTACCCTTCTGTCCG 529752 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | || || || |||||||| ||||| Sbjct 529751 TGACGCGAGGCGAACTTGTCACCAAT 529726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884751835603796