Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4410 141 2e-31 seq3792 129 1e-27 seq883 129 1e-27 seq57 98.7 2e-18 seq225 91.5 3e-16 >seq4410 Length=11626 Score = 141 bits (156), Expect = 2e-31 Identities = 185/247 (75%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAAT-ACATTAGCATG 131 ||||| ||||| |||| | | || |||| |||| ||| || |||| | | | ||||| Sbjct 1691 TTTACCTTGAATAAATCAAAATGCTCAATATAGGCGTTTCGCCTGAATGATAGT-GCATG 1633 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||| ||| | ||||| |||| ||||||| | | |||| |||||| || Sbjct 1632 GAATAATGGAATAAGACTT-CGGTT-TATTCTGTTGGTCTTGAA-ACCGATGTAATGGTT 1576 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||||| | |||||| | |||| | || |||||||||||||||||| | Sbjct 1575 AAGAGGGACTGACGGGGGCATTTGTATCGATGCGTGAGAGGTGAAATTCTTGGACCGCAT 1516 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| ||||||||||||||| || ||||| |||| ||||||||||| ||||||||| Sbjct 1515 CGAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAG 1457 Query 312 TTAGGGG 318 | || || Sbjct 1456 TCAGAGG 1450 >seq3792 Length=9805 Score = 129 bits (142), Expect = 1e-27 Identities = 122/153 (80%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTA 126 || ||||||||||||||||||||||| ||||||| || |||| | |||||||| | Sbjct 3833 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC-GGTCTTTATACGATCGAATACTGTT 3775 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 |||||||||||| |||||||| | ||||||||||||||||| | | ||| |||| Sbjct 3774 GCATGGAATAATGAAATAGGACTTT-GGTTCTATTTTGTTGGTCTTCGGAACCAAGGTAA 3716 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 ||||||| ||||| || |||||| | |||||| Sbjct 3715 TGATTAAGAGGGACAGACGGGGGCATTAGTATT 3683 >seq883 Length=1795710 Score = 129 bits (142), Expect = 1e-27 Identities = 193/264 (73%), Gaps = 15/264 (6%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATA 121 ||| | || ||||||||||| ||||||||||| | ||||||||| | | ||||| Sbjct 17153 GCCGGCACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGCAGCCACCTGAATA 17212 Query 122 C--ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-- 177 | | | |||||||||||| ||||||||| | |||||||||||||||||||| | ||| Sbjct 17213 CCGAGT-GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGATG 17269 Query 178 --CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 ||| |||||||| || || ||||| |||||| | ||||| | |||||| | Sbjct 17270 CCCCGAGGTAATGATCAAAAGAGATAGACGGGGGCATTCGTATTGCGACATTAGAGGTCA 17329 Query 236 AATTCTTGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 ||||| |||| | || | |||| | ||||||| || ||||| ||||| || | Sbjct 17330 AATTCCTGGA-TCATCGCAAGATGGGCAGAATCGAAAGCATTTGCCAAGAATGTTGTCTT 17388 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 | |||| |||||||| |||| || Sbjct 17389 TGATCA-AGAACGAAACTTAGAGG 17411 >seq57 Length=1349677 Score = 98.7 bits (108), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA----CCGCC 182 |||||||||||| ||||||||| | |||||||||||||||||||| | ||| ||| Sbjct 1277057 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAAGCCCCGAG 1277000 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||| | ||||| || |||||| | ||||| || ||||||||||||||| Sbjct 1276999 GTAATGATCGAAAGGGACAGACGGGGGCATTCGTATTACGACGTTAGAGGTGAAATTCTT 1276940 Query 243 GGAT 246 |||| Sbjct 1276939 GGAT 1276936 >seq225 Length=134008 Score = 91.5 bits (100), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 148 CGTGCGGTTCTATTTTGTTGGTTTCTAGGA----CCGCCGTAATGATTAATAGGGATAGT 203 ||| ||||| |||||||||||||| | ||| ||| |||||||| || ||||| || Sbjct 56618 CGTCCGGTTATATTTTGTTGGTTT-TCGGAAGCCCCGAGGTAATGATCAAAAGGGACAGA 56676 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||||| || |||||||||||||| |||| ||||| || Sbjct 56677 CGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTCGGATCGTCGCAAGACGGACAG 56736 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| || ||||| |||||||| | | || ||||||||||||| || Sbjct 56737 AAGCGAAAGCATTAGCCAAGAATGTTTTCTCTGAACA-AGAACGAAAGTTAGAGG 56790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914910229376