Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4410 147 9e-33 seq3792 143 1e-31 seq6996 86.0 3e-14 >seq4410 Length=11626 Score = 147 bits (162), Expect = 9e-33 Identities = 210/296 (71%), Gaps = 20/296 (7%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||| |||||| || ||| |||||| | ||||| ||||| Sbjct 10883 CCCGTCTTGAAACACGGACCAAGAAGTCTAGCAACTACGCGAGTCATGGGGTGAGAAACC 10824 Query 468 CGTGCGCGTAATGAAAGTGAACGG-----AGGTGG--GA------ACCCGTGAG------ 508 | ||||||||||||| || | | ||| || | |||| Sbjct 10823 CAATGGCGTAATGAAAGTAAAGGCTATTCATCTGGCTGATATGTGATTCGTGCTTCGGCG 10764 Query 509 -GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 | ||| | | | || || | | ||| | | | ||| ||||| || || | Sbjct 10763 CGACGCAACGTAGCCCCATGCCAACTGCTTGCAGTAGTGTGGAGGTAGAGCGTAATTGCT 10704 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 ||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| Sbjct 10703 GGGACCCGAAAGATGGTGATCTATGCTTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGG 10644 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | || |||| ||||| ||||||||||||||||| | ||| | |||||||||| Sbjct 10643 AAGTCCGAAGCGTTTCTGACGTGCAAATCGATCGTCTGACTTGAGCATAGGGGCGA 10588 Score = 109 bits (120), Expect = 2e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| |||| | |||||||| || || |||| | | ||||||||||||| Sbjct 11408 GAGTCGAGTTGCTTGGAAGTGCAGCTCAAAGCAGGTGGTATACCGCATCTAAAGCTAAAT 11349 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | || ||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 11348 ATGAGTACGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAAG 11289 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 11288 AGAGAGTTCAAGAGTACGTGAAA 11266 >seq3792 Length=9805 Score = 143 bits (158), Expect = 1e-31 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 459 GTTGGTACCCGAAAGATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGG 400 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 399 TGGAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 341 Score = 104 bits (114), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||| ||| || || | | | || |||| |||||| | | ||||| ||||||| Sbjct 1262 GAGTCAGGTTACTTGAGAGTGTAACCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1203 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| | |||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 1202 ATTGCAGCGTGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAAG 1143 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCA 209 |||||||| || || |||||||| ||| ||| || || || ||||| Sbjct 1142 AGAGAGTTCAATAGGACGTGAAACCACTGACAGGCAAACGGGTGGAACCA 1093 >seq6996 Length=2764 Score = 86.0 bits (94), Expect = 3e-14 Identities = 89/119 (75%), Gaps = 12/119 (10%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||||| ||||||||| |||||||||||| | ||| |||| ||| |||||| ||| Sbjct 2493 GTTGGGATCCGAAAGATCGTGAACTATGCCCGGCCAGGACGAAGTCAGGGGAAACCCTGA 2434 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| |||| |||||||| | ||||||||||||||| Sbjct 2433 TGGAGGTCCGCAGCGATTCT------------GATCGTCAGAGCTGGGTATAGGGGCGA 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079320850100