Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4410 358 1e-96 seq3792 342 9e-92 seq844 172 9e-41 seq668 105 1e-20 >seq4410 Length=11626 Score = 358 bits (396), Expect = 1e-96 Identities = 237/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8446 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 8505 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 8506 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 8565 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 8566 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 8625 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| |||||| | | | | | | | | | |||||||||||| Sbjct 8626 CCTGTGGTAACTTTTCTGACACCTCAAACTTGATACTGTCAAGATTTTAAGGATCGATAG 8685 Query 270 GCCACACTTTCATGGTTTGTATT 292 ||||| ||||| ||| |||||| Sbjct 8686 GCCACGCTTTCGCGGTCTGTATT 8708 >seq3792 Length=9805 Score = 342 bits (378), Expect = 9e-92 Identities = 234/263 (89%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7915 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 7974 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 7975 AGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACA 8034 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 8035 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 8094 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| ||||| || | | ||| || | | ||||||||||||||| Sbjct 8095 GTGGTAACTTTTCTGACACCTTTAACTTAAAACTCTTAAACGAGTTAAAGGATCGATAGG 8154 Query 271 CCACACTTTCATGGTTTGTATTC 293 || ||||| || |||||| Sbjct 8155 CCCGGCTTTCGCCGTCCGTATTC 8177 >seq844 Length=287042 Score = 172 bits (190), Expect = 9e-41 Identities = 135/159 (85%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||||||| |||||||||||| || |||||||||||||||||| | |||||||||||| Sbjct 113938 TCTGCTTCGCAATGATAGGAAGACCCAACATCGAAGGATCAAAAATCGACGTCGCTATGA 113997 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||| ||| |||||||||||||||||| |||||||||||||||| ||||||| || | Sbjct 113998 ACGCTCGGCCGCCACAAGCCAGTTATCCGTGTGGTAACTTTTCTGACACCTCTTGCTGGA 114057 Query 243 AA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 || | || | | | |||||||||||||||| ||||| Sbjct 114058 AACTCTCCA-AGCCAAAAGGATCGATAGGCCGTGCTTTC 114095 >seq668 Length=365451 Score = 105 bits (116), Expect = 1e-20 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||| || ||| |||| ||| |||||||||||| | ||||||||||| |||| Sbjct 46063 GTGGGCAAAGAATTCAACACTTCGTGAATTCTGCTTCACAGTCGTAGGAAGAGCCAACAT 46004 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 || || || ||||| ||||||||||||||| || || |||||||| | ||||| ||| Sbjct 46003 TGATGGGTCGAAAAGTTACGTCGCTATGAACGTTTAGCCACCACAAGCTAATTATCTCTG 45944 Query 214 TGGTAACTTTTCTGGCACCTCTAGC 238 ||| ||||| || ||||||| || Sbjct 45943 TGGACACTTT--TGACACCTCTTGC 45921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854129479872