Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3792 104 2e-20 seq883 91.5 2e-16 seq57 82.4 8e-14 >seq3792 Length=9805 Score = 104 bits (114), Expect = 2e-20 Identities = 118/154 (77%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT----GCTCGAATACATTA 65 || ||||||||||||||||||||| | ||||||| || |||| | |||||||| | Sbjct 3833 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC-GGTCTTTATACGATCGAATACTGTT 3775 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| |||||||| | ||||||||||||| ||| | | ||| | ||| Sbjct 3774 GCATGGAATAATGAAATAGGAC-TTTGGTTCTATTTTGTTGGTCT-TCGGAACCAAGGTA 3717 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATT 159 ||||| || | ||| || |||||| | |||||| Sbjct 3716 ATGATTAAGAGGGACAGACGGGGGCATTAGTATT 3683 >seq883 Length=1795710 Score = 91.5 bits (100), Expect = 2e-16 Identities = 135/185 (73%), Gaps = 11/185 (6%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATAC--ATT 64 || ||||||||||| ||||||||| | | ||||||||| | | |||||| | | Sbjct 17159 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGCAGCCACCTGAATACCGAGT 17218 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC-- 122 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| ||| Sbjct 17219 -GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGATGCCCCGA 17275 Query 123 -GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| || | ||||| |||||| | ||||| | | |||| |||||| Sbjct 17276 GGTAATGATCAAAAGAGATAGACGGGGGCATTCGTATTGCGACATTAGAGGTCAAATTCC 17335 Query 182 TGGAT 186 ||||| Sbjct 17336 TGGAT 17340 >seq57 Length=1349677 Score = 82.4 bits (90), Expect = 8e-14 Identities = 94/123 (76%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG--- 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| |||| Sbjct 1277056 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAAGCCCCGAGG 1276999 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| | | ||| || |||||| | ||||| || | |||||||||||||| Sbjct 1276998 TAATGATCGAAAGGGACAGACGGGGGCATTCGTATTACGACGTTAGAGGTGAAATTCTTG 1276939 Query 184 GAT 186 ||| Sbjct 1276938 GAT 1276936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511842956480