Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1376 111 3e-22 seq95 105 1e-20 seq1348 104 4e-20 >seq1376 Length=1384563 Score = 111 bits (122), Expect = 3e-22 Identities = 181/253 (72%), Gaps = 17/253 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||| ||| |||| | ||||| ||||||||| ||||||||| || ||| Sbjct 239804 CATTGTAGCGCGCTTGCAGCCCCAGAGATCTATAGGCATCACATACCTGTTATCGC-TCA 239746 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC---ACCAACCATAGT 133 | || | |||| | || | ||||| ||||||| || | || || | ||| Sbjct 239745 ATCT-CGTGCGGCTAAACACCGTTTATCCCTATAAGAAGT-AGACTGGACAAA--AAAGT 239690 Query 134 CGATGGGGCTATTTAGCAGGTTAAG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||| | ||||||| | | | |||||| ||||||||||||| | ||||||||||| Sbjct 239689 CGA-GCTATTATTTAGAATTTATTGAGTCTCGCTCGTTATCGGAATAACCCAGACAAATC 239631 Query 193 ACTCCACCAACT-------AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||| |||||| || ||| | ||| |||||||| ||| |||| |||||||| Sbjct 239630 GCTCCGCCAACTAACAGAAAAAAACAGTCATCCACCACCAACCACCAAATCGAGAAAGAG 239571 Query 246 CTATCAATCTGTC 258 || ||||||||| Sbjct 239570 CTTCCAATCTGTC 239558 >seq95 Length=139874 Score = 105 bits (116), Expect = 1e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||| | | || ||||||| ||||||||||||| | |||||||||| |||||||||||||| Sbjct 74855 CTCCTCCTTTGTCGGAATAAACCAGACAAATCGCGCCACCAACTAGGAACGGCCATGCAC 74796 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||| | || |||||||||| |||||||||| Sbjct 74795 TACCAGCCACCAAGTCGAGAAAGAGCTTTCAATCTGTC 74758 >seq1348 Length=2808121 Score = 104 bits (114), Expect = 4e-20 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 || ||||||||||||| |||||||||||| |||||| |||||||||||| ||| |||| Sbjct 2333222 ATAAACCAGACAAATCGCTCCACCAACTAGGAACGGTCATGCACCACCAACCACTAAATC 2333281 Query 237 AAGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 2333282 GAGAAAGAGCTTTCAATCTGTC 2333303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786599816