Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1367 363 3e-98 seq1389 306 6e-81 seq1339 163 5e-38 seq1371 84.2 4e-14 >seq1367 Length=1568206 Score = 363 bits (402), Expect = 3e-98 Identities = 261/296 (88%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 1566970 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 1567029 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1567030 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 1567089 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567090 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1567149 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1567150 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 1567209 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || ||| | |||||||||||||||||| ||||| ||| |||| || Sbjct 1567210 AGAAACTATC--TGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 1567263 >seq1389 Length=1089963 Score = 306 bits (338), Expect = 6e-81 Identities = 249/296 (84%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| |||| | | |||| |||| |||||||| ||||||||||| Sbjct 973925 TACTAAGCAGGATTACTATTGCAACAATTAGTCAACAGTGGGGTAAAAGTAACCTGTCTC 973984 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct 973985 ACGACGGTCTAAACCCAATTCACGTTCCCTATTAGTGGGTGAGCAATCCAACGCTTGGCG 974044 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 974045 AATTCTGCTTCGCAATGATAGGAAGAGCCGAAATCGAAGGATC-AAGAGCAACGTCGCTA 974103 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || | |||||||| ||||||||||||| |||||||||||||||||||| ||||| | || Sbjct 974104 TGGATGCTTGGCTACCACAAGCCAGTTGTCCCTGTGGTAACTTTTCTGACACCTTTTACC 974163 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || ||| | ||||||||| |||||||| ||||| ||| |||| || Sbjct 974164 AGAAACTATC--TGGATTGAAAGGATCGGTAGGCCACGCTTTCGCGGTCTGTACTC 974217 >seq1339 Length=4504006 Score = 163 bits (180), Expect = 5e-38 Identities = 130/153 (85%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 3668960 AATTCTGCTTCGCTATGATAGGAAGAGCCGATATCAAAGGATCAAAAAGCAACGTCGCTA 3669019 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||| ||||||||||| |||||||||||| || ||||| || ||||| | || Sbjct 3669020 TGGACGCTTGATTGCCACAAGCCGGTTATCCCTGTGCTATCTTTTGTGACACCTATTACC 3669079 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGG 270 ||| |||| | | | |||||||||||||| Sbjct 3669080 AGAAACTTTC--CGTATTAAAAGGATCGATAGG 3669110 >seq1371 Length=1523682 Score = 84.2 bits (92), Expect = 4e-14 Identities = 97/129 (75%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 ||| | || ||||||||||| |||||| |||||| |||| |||| || || | | | | Sbjct 210863 CATAATGGCCTAAACCCAGCGCACGTTTCCTATTGGTGGATGAATAACTCACCACCTGGC 210804 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||| ||| | |||| ||||||| | ||| |||| ||||||| | |||| || Sbjct 210803 GAATTCTACTTTGCAATGAGAGGAAGAATC--CATAGAAGAATCAAAAGGTGACGT--CT 210748 Query 179 ATGAACGCT 187 ||| ||||| Sbjct 210747 ATGGACGCT 210739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854385167616