Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1522 405 2e-110 seq1367 338 2e-90 seq1095 120 1e-24 seq811 116 1e-23 seq1048 113 1e-22 seq1346 111 5e-22 seq1384 78.8 3e-12 >seq1522 Length=412789 Score = 405 bits (448), Expect = 2e-110 Identities = 410/524 (78%), Gaps = 25/524 (5%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||| | ||| |||| || ||| |||| ||||||||||||| |||| | Sbjct 25957 TTTTGCTCTGCGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTAGGTTACGA 25898 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| |||||||||||||||| ||| |||| || |||| | | | ||| Sbjct 25897 TTTGACAGATGTACCGCCCCAGCCAAACTTCCCGCCTGTCACTGTCTGCGA---GAGTCG 25841 Query 128 ---GCCCGCGAAG-GAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTCCGC 178 | || | | | | | ||||| | | ||||| || | |||| || || | Sbjct 25840 CGAGGCCACCAGGTGGCTTTGCTTAAGACGAAGAAAAAGGA-GCAGAAGCTCAATTTTCC 25782 Query 179 T-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG 236 | ||| || |||||||| || |||| || || ||||||||||| | ||| ||||| | Sbjct 25781 TCTCACCGAATAAGTAAAGAATCGATGAGAGTGGTGGTATTTCATTGGCGACCGAA--GT 25724 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| ||||||||||| ||||||| ||| ||||||||| ||||||| Sbjct 25723 CTCCCACCTATGCTACACCTCTC-------TTCACAATGTCAAACTAGAGTCGAGCTCAA 25671 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||| | ||||||||||||| ||||||||| |||||||||| Sbjct 25670 CAGGGTCTTCTTTCCC-GCTATCTTTGCCAAGCCCGTTCACTTGGCTGTTGTTTCGCTAG 25612 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| |||||||||||||||||||||| ||| |||||||| || |||| || Sbjct 25611 ATAGTAGTTAGACCCAGTGGGAATCTCGTTAATCCAATCACGCGCGTCAGTAGTTAGCTG 25552 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 25551 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTCATCCGCGCTTAC 25492 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| ||||| |||||||||||||||||||| Sbjct 25491 TCGAATTACTACGATTTAACATTTAGAGCACTGGGCAGAAATCA 25448 >seq1367 Length=1568206 Score = 338 bits (374), Expect = 2e-90 Identities = 326/410 (80%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 1567297 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 1567356 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || | | || Sbjct 1567357 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGCGAGAGTC 1567416 Query 127 G---GCCCGCGAAG-GAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTCCG 177 | | || | | | | | ||||| | | ||||| | | |||| || ||| Sbjct 1567417 GCAAGGCCACCAGGTGGCTTTGCTTAAGACAAAGAAAAAAGA-GCCGAAGCTCAATTCTC 1567475 Query 178 CT-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 | ||| || |||||||| || |||| | || ||||||||||| | ||| ||||| | Sbjct 1567476 TTCTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGGCGACCGAA--G 1567533 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 1567534 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 1567593 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1567594 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 1567653 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1567654 GATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 1567703 Score = 129 bits (142), Expect = 2e-27 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| || ||| | |||| | | | ||||||| ||| ||||||| ||||||| | Sbjct 1531444 CTCCCACTAATGCTATATCTCTAATGACTCTTCACAATGTCATACTAGAGACAAGCTCGA 1531503 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||| |||||||||||| || ||||||||||||||||||||||||||| |||| | Sbjct 1531504 CATGGTCATCTTTCCCCGCTTTTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTCCGCTCG 1531563 Query 357 ATAGTA 362 |||||| Sbjct 1531564 ATAGTA 1531569 >seq1095 Length=1290 Score = 120 bits (132), Expect = 1e-24 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 74 TGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 15 Query 457 CGCCGTTTACCCGC 470 |||||||||||||| Sbjct 14 CGCCGTTTACCCGC 1 Score = 116 bits (128), Expect = 1e-23 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1290 TGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATG 1231 Query 399 CGCGTCA 405 ||||||| Sbjct 1230 CGCGTCA 1224 >seq811 Length=5166 Score = 116 bits (128), Expect = 1e-23 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5095 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 5154 Query 455 CCCGCCGTTTAC 466 |||||||||||| Sbjct 5155 CCCGCCGTTTAC 5166 Score = 113 bits (124), Expect = 1e-22 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 60 Query 401 CGTCA 405 ||||| Sbjct 61 CGTCA 65 >seq1048 Length=1595 Score = 113 bits (124), Expect = 1e-22 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1595 GCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 1536 Query 401 CGTCA 405 ||||| Sbjct 1535 CGTCA 1531 >seq1346 Length=2908250 Score = 111 bits (122), Expect = 5e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||| |||||| ||||||||||||||| || ||||||| ||||||||||| ||||| Sbjct 928296 TTCCCTTGACTGTGGATTCGCTAGATAGTAGTTATGGACAGTAGGAATCTCGTTGATCCA 928355 Query 393 TTCATGCGCGTCACTAATT 411 ||||||||||||| ||||| Sbjct 928356 TTCATGCGCGTCAGTAATT 928374 >seq1384 Length=1247828 Score = 78.8 bits (86), Expect = 3e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||||| | |||||||||||||||||||| |||| | ||||| || | ||| || || Sbjct 782985 AGAGTGAATGTTACTCCCGCCGTTTACCCACGCTCACTCGAATTACTACGATTTAACTTT 783044 Query 500 CAGAGCACTGGGCAGAAATCA 520 |||||| |||||||||||||| Sbjct 783045 CAGAGCGCTGGGCAGAAATCA 783065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635171612928