Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20ceylanicum_20[genbank_20GCA_5F000688135.1_202014-03- 25] 1,736 sequences; 313,092,710 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1581 230 7e-58 seq1408 188 2e-45 seq1375 143 8e-32 seq1338 116 1e-23 seq1604 80.6 8e-13 seq1347 78.8 3e-12 >seq1581 Length=331078 Score = 230 bits (254), Expect = 7e-58 Identities = 328/453 (72%), Gaps = 24/453 (5%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || || ||||||| || ||||||||||||||||| Sbjct 257454 TATTTTTAGTCACTATCTCATCTCTTCAAGAGTGGGTAAGTTACGCGCCTGCTGCCTTCC 257513 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||| |||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 257514 CTGGATGTGGTAACCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 257573 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || ||||||| | |||||||| |||| | || Sbjct 257574 ACCGTTATAACCATGGTAGACTAATAGATTACCATC--AGTTTGATAGGACAGACACTTT 257631 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281 | | |||| ||| |||| | |||| | |||||| || || | || Sbjct 257632 TTCGGAATATCGGCGG-ACAAG--CCGCCGATATGCAGCGTTATTTAGAGCCAGCAAACT 257688 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 | |||||||| ||| ||| | |||||||| | ||| | ||| ||||| |||||| Sbjct 257689 ACACCCGAAGGTGATTGATTTGT--TCTAATAATTGCACTCTTTCGAAAGTCAGGGTTTA 257746 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT-CAAAT 399 | |||||||||||||| |||||| || | |||||||| || | ||| | | ||| Sbjct 257747 TCCGCATGTATTAGCTCCAGAATTGCCGCAGTTATCCA------AAAGGACTTTCCGAAT 257800 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 || || | ||| | ||||||||| |||||||||| || | ||||| | | | Sbjct 257801 AAGTGACATCTGCTCTAATGAGCCGTTCGCAGTTT--CTCTTTAGAT------GAACTCG 257852 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||||||| | ||||||| Sbjct 257853 ACATGCATGGCTTAATCTTTAAACTGAGCATAT 257885 >seq1408 Length=834507 Score = 188 bits (208), Expect = 2e-45 Identities = 316/453 (70%), Gaps = 43/453 (9%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||| ||| | || || ||| ||| || ||||||||||||||||| Sbjct 729731 TATTTCTAGTCACTTTCTCATCTCTTCAAGAGTGGATAAGTTACGCGCCTGCTGCCTTCC 729672 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||| || | |||| ||||||||| | || Sbjct 729671 TTGGATGTGGTAGCCGTTTCTAAGGCTCTCTTTGCGGAGTCGAACCCTTA--------TA 729620 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | ||||||||||||| | || Sbjct 729619 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGTTTGATAGGGCAGACACTTC 729562 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-G 281 || | |||| | | |||| | |||||| || ||| |||| Sbjct 729561 TTTGGA------------CAAG--CCTCCGATATGCAGCGTTATTTAGAGTCAGCAAGCT 729516 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 | |||||||| || ||| | |||||||| | ||||| ||| ||||| |||||| Sbjct 729515 ACACCCGAAGGTGATTAATTTGT--TCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTA 729458 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT-CAAAT 399 || |||||||| ||||| |||||| || | ||||| || || | ||| | | ||| Sbjct 729457 TTCGCATGTATCAGCTCCAGAATTGCCGCAGTTATTCA------AAAGGACTTTCCGAAT 729404 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 || || | ||| | ||||||||| |||||||||| || | ||||| | | | Sbjct 729403 AAGTGACATCTGCTCTAATGAGCCGTTCGCAGTTT--CTCTTTAGAT------GAACTCG 729352 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||||||| | ||||||| Sbjct 729351 ACATGCATGGCTTAATCTTTAAACTGAGCATAT 729319 >seq1375 Length=1414005 Score = 143 bits (158), Expect = 8e-32 Identities = 115/138 (83%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 537782 TAAGTTACGCGCCTGCTGCCTTCTTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCG 537723 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 || ||||||||| |||| |||||||| || ||||||||| | || |||||||| Sbjct 537722 GAGTCGAACCCTTATTCTCCGTTACCTGTAATAACCATGGTATACTGATAGACTACCATC 537663 Query 199 GAAAGTTGATAGGGCAGA 216 | ||||||| |||||| Sbjct 537662 --AGGTTGATAAGGCAGA 537647 >seq1338 Length=4677894 Score = 116 bits (128), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||||||| ||| | || || ||| ||| || |||||||| ||||||| |||||||| Sbjct 585661 GTCACTATCTCGTCTCTTCAAGAGTGGATAAGTTACGCGCCTGTTGCCTTCTTTGGATGT 585602 Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 ||||||| ||||| |||||||||| ||||||||||| | ||| || |||| | ||| Sbjct 585601 GGTAGCCTTTTCTAAGGCTCCCTCATCGGAATCGAACATTTATTGTCCATTACTTG-TGA 585543 Query 171 T-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | | |||||||| | | | |||||||| | ||||||| |||||| Sbjct 585542 TAAGCATGGTAGACTAAAAGACTACCATC--ATGTTGATAAGGCAGA 585498 >seq1604 Length=301861 Score = 80.6 bits (88), Expect = 8e-13 Identities = 127/176 (72%), Gaps = 16/176 (9%) Strand=Plus/Plus Query 319 ACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||| ||| ||||| || ||| || |||||||||||||| |||||| || | ||||||| Sbjct 21732 ACCCTTTCGAAAGTCAGGCTTTATTCGCATGTATTAGCTCCAGAATTGCCGCAGTTATCC 21791 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || |||| || | ||||| | | ||| | | ||||||| ||||||| ||| | Sbjct 21792 ----AGAAAGG-CTTACCGAATAAGTGGCATCTGCTCTCATGAGCCGTTCGCAGCTTCTC 21846 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC-AAGCATAT 492 | || | || | | | ||||||||||||||||||| |||| ||||||| Sbjct 21847 TTTA---AATG-----AACTCGGCATGCATGGCTTAATCTTT-AGACTGAGCATAT 21893 >seq1347 Length=2877100 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/92 (79%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 |||||||||||||||| ||||||||| |||| |||||||||| |||||| ||| | Sbjct 1994099 AGGCTCCCTCTCCGGAGTCGAACCCTTATTCTTCGTTACCCGTAATAACCATGATAGACT 1994040 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | | |||||||| | ||||||||||||| Sbjct 1994039 AACAGACTACCATC--AGTTTGATAGGGCAGA 1994010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510373779456