Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ancylostoma_20duodenale_20[genbank_20GCA_5F000816745.1_202015-01-16] 69,981 sequences; 332,875,813 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3402 242 1e-61 seq8900 178 4e-42 >seq3402 Length=17133 Score = 242 bits (268), Expect = 1e-61 Identities = 271/356 (76%), Gaps = 12/356 (3%) Strand=Plus/Plus Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 ||||||| ||| |||||| | ||||||||| |||||||||| ||||||| |||| || | Sbjct 2386 CGTTATGATTTGACAGATATACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGC 2445 Query 120 CCGGATCGGCCCGCGA--AG--GAC----CTTAACGCCAGAAAATGGTCGGTGAAGACCA 171 | ||| | | || | | ||||| | | ||| | |||| || Sbjct 2446 GAGAGTCGCAAGGTCACCAGCTGGCTCTGCTTAAGACGAAGAAAGAAGAGCCGAAGCTCA 2505 Query 172 GTTCCGCT-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-C 229 || | ||| || |||||||| || ||| | || ||||| ||||| | ||| | Sbjct 2506 ATTTTCTTCTCACCGAATAAGTAAAGAATAGATGAAAGTGGTGGTGTTTCATTGGCGATC 2565 Query 230 GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 ||| | ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||| Sbjct 2566 GAA--GTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCA 2623 Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 || ||||||| ||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 2624 AGTTCAACAGCGTCTTCTTTCCCCACTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTT 2683 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 2684 TCGCTAGATAGTAGTTAGGGACAGTGGCAATCTCGTTAATCCATTCATGCGCGTCA 2739 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||| ||| | Sbjct 2342 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCTTTACG 2283 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 ||| |||||||| ||||||||| |||||||||| Sbjct 2282 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCC 2249 >seq8900 Length=8374 Score = 178 bits (196), Expect = 4e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 278 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 219 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| | ||||| || | ||| |||||||||||||||||||| Sbjct 218 CCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAG 159 Query 515 AAATCA 520 |||||| Sbjct 158 AAATCA 153 Score = 113 bits (124), Expect = 1e-22 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 5013 GCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 4954 Query 401 CGTCA 405 ||||| Sbjct 4953 CGTCA 4949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634055670688