Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10626 161 1e-37 seq7720 161 1e-37 seq383 131 3e-28 seq13 125 1e-26 seq4099 95.1 2e-17 >seq10626 Length=2977 Score = 161 bits (178), Expect = 1e-37 Identities = 185/240 (77%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 625 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 682 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 683 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 742 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | || |||| | | ||| | || |||||||||||||| Sbjct 743 ACCAATACCTTTCGGCAATGG--ATAGGCCAGCTGATTCTTCCATTGTAGCGCGCGTGCA 800 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 801 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 857 >seq7720 Length=5820 Score = 161 bits (178), Expect = 1e-37 Identities = 185/240 (77%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 5576 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 5633 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 5634 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 5693 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | || |||| | | ||| | || |||||||||||||| Sbjct 5694 ACCAATACCTTTCGGCAATGG--ATAGGCCAGCTGATTCTTCCATTGTAGCGCGCGTGCA 5751 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 5752 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 5808 >seq383 Length=99270 Score = 131 bits (144), Expect = 3e-28 Identities = 178/240 (74%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||| | |||||||||| ||| || ||||| ||||||| | |||||| |||||| | Sbjct 8540 GTATAAATGACAGGGACGTAATCAGCGTGAGCTA-ATGACTCACACTTACTGGGAATT-C 8597 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || || | |||| ||||||| ||||| | |||||| | || Sbjct 8598 CTCGTTCAAGGGAAATAACTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 8657 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | || |||| | | || | || ||| ||||||||||| Sbjct 8658 ACCAATACCTTACGGCAATGG--ATAGGCCAGCTGGTTCTTCCATTGTTGCGCGCGTGCG 8715 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 8716 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 8772 >seq13 Length=271176 Score = 125 bits (138), Expect = 1e-26 Identities = 177/240 (74%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||| ||||| ||| || ||||| |||||||| ||||| ||||||||| | Sbjct 156297 GTACAAATGGCAGGTACGTAATCAGCGTGAGCT-GATGACTCACGCTTTCTAGGAATT-C 156354 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| || || ||||||||| ||||||| |||| | | ||| | | || Sbjct 156355 CTCGTTCCAGGGAAATAATTGCAATTCCCTATCCCGGCCACGGAATAGTTTTGACGGTTT 156414 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| || ||| | | | ||| | || |||| |||| |||| Sbjct 156415 ACCAATACCTTTCGGC--AGTGGATTGGCCAGCTGATTCTTCCATTGTAACGCGTGTGCA 156472 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 || | ||||| |||||||||||||||||||| ||| | ||||| || |||| | ||||| Sbjct 156473 GCTCCGAACACCTAAGGGCATCACAGACCTGCTATCG-CTCAACCT--CGTGCGGCTAAA 156529 >seq4099 Length=15255 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || |||| ||||||||| | ||||||||||| ||| Sbjct 14528 GTACAAATGGCAGGGACGTAATCAGCGTGAGC-TGATGACTCACACTTACTAGGAA-TTC 14585 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 14586 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 14645 Query 120 ACCCGGACCTGTCGGC 135 ||| |||| ||||| Sbjct 14646 ACCAATACCTTTCGGC 14661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751864244025