Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq10626 210 3e-52
seq3948 113 7e-23
seq16 109 9e-22
seq383 82.4 1e-13
seq7720 80.6 4e-13
seq1384 78.8 1e-12
seq5182 77.0 5e-12
>seq10626
Length=2977
Score = 210 bits (232), Expect = 3e-52
Identities = 194/242 (80%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||
Sbjct 783 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 841
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | |||| | || | ||||||||||||| | | | ||| || |
Sbjct 842 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACTCAATAATCTA 900
Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196
| |||||||||||| || |||||| ||||||||||||| ||||||||||||| |||
Sbjct 901 -GTCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCTC 959
Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||
Sbjct 960 CACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTG 1019
Query 257 TC 258
||
Sbjct 1020 TC 1021
>seq3948
Length=15931
Score = 113 bits (124), Expect = 7e-23
Identities = 96/117 (82%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||||||||| |||||| ||||||||||||| |||||| |||||| |||| |||
Sbjct 9441 CTATTTAGCAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGTCAAATCGCTCCGCCA 9382
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||||| | ||| |||| || || |||| |||| ||| | ||||||||||
Sbjct 9381 ATTAAGAACGACTATGGACCATCAACC-CCCAATCGAGAATGAGATTTCAATCTGTC 9326
>seq16
Length=247193
Score = 109 bits (120), Expect = 9e-22
Identities = 95/117 (81%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|| |||||||| | || ||||| | ||||||||||| ||||| | ||||| ||||| ||
Sbjct 28289 CTGTTTAGCAGCTAGAG-TCTCGCTGGTTATCGGAATAAACCAAAAAAATCGCTCCATCA 28347
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||| ||||||| ||| |||| | |||||||| | ||| ||||
Sbjct 28348 ACTAAGAACGGCCATGTACCACCAGCCACTAAATCGAAAAAGAGCTTTTAATATGTC 28404
>seq383
Length=99270
Score = 82.4 bits (90), Expect = 1e-13
Identities = 116/159 (73%), Gaps = 13/159 (8%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| ||||||||||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct 8698 CATTGTTGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCA 8756
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG----CCAGCCAC-CAACCATA 131
| | || |||| | || | ||||||||||||| | || ||| || ||
Sbjct 8757 ATC-TCGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACACAGAAATCTA 8815
Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170
||| |||||||||||| || || ||| |||||
Sbjct 8816 GTC------ACTATTTAGCAGGCTAGAGTATCGCTCGTT 8848
>seq7720
Length=5820
Score = 80.6 bits (88), Expect = 4e-13
Identities = 57/64 (89%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| | ||||
Sbjct 5734 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCA 5792
Query 77 AACT 80
| ||
Sbjct 5793 ATCT 5796
>seq1384
Length=46289
Score = 78.8 bits (86), Expect = 1e-12
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||| ||| | |||| ||||||||||||| ||||||||||||| |||| ||| ||||
Sbjct 14404 TTAGCCACAGGAATCGCTCCACCAACTAAAAACGGCCATGCACAACCAGCCACCAAATCG 14345
Query 238 AGAAAGAGCTATCAAT 253
|||||||||| |||||
Sbjct 14344 AGAAAGAGCTTTCAAT 14329
>seq5182
Length=11255
Score = 77.0 bits (84), Expect = 5e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||||||||| ||||| |||||||||| || || |||||| | ||| |||| ||||
Sbjct 1530 CCAGACAAATCTCTCCATTAACTAAGAACAGCAATTCACCACAAACCACCAAATCGAGAA 1471
Query 242 AGAGCTATCAATCTGTC 258
| |||| ||||||||||
Sbjct 1470 AAAGCTTTCAATCTGTC 1454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796656156435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |