Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10626 210 3e-52 seq3948 113 7e-23 seq16 109 9e-22 seq383 82.4 1e-13 seq7720 80.6 4e-13 seq1384 78.8 1e-12 seq5182 77.0 5e-12 >seq10626 Length=2977 Score = 210 bits (232), Expect = 3e-52 Identities = 194/242 (80%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 783 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 841 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | |||| | || | ||||||||||||| | | | ||| || | Sbjct 842 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACTCAATAATCTA 900 Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196 | |||||||||||| || |||||| ||||||||||||| ||||||||||||| ||| Sbjct 901 -GTCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCTC 959 Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||| Sbjct 960 CACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTG 1019 Query 257 TC 258 || Sbjct 1020 TC 1021 >seq3948 Length=15931 Score = 113 bits (124), Expect = 7e-23 Identities = 96/117 (82%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||||||| |||||| ||||||||||||| |||||| |||||| |||| ||| Sbjct 9441 CTATTTAGCAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGTCAAATCGCTCCGCCA 9382 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||| | ||| |||| || || |||| |||| ||| | |||||||||| Sbjct 9381 ATTAAGAACGACTATGGACCATCAACC-CCCAATCGAGAATGAGATTTCAATCTGTC 9326 >seq16 Length=247193 Score = 109 bits (120), Expect = 9e-22 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 || |||||||| | || ||||| | ||||||||||| ||||| | ||||| ||||| || Sbjct 28289 CTGTTTAGCAGCTAGAG-TCTCGCTGGTTATCGGAATAAACCAAAAAAATCGCTCCATCA 28347 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| ||||||| ||| |||| | |||||||| | ||| |||| Sbjct 28348 ACTAAGAACGGCCATGTACCACCAGCCACTAAATCGAAAAAGAGCTTTTAATATGTC 28404 >seq383 Length=99270 Score = 82.4 bits (90), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 13/159 (8%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| ||||||||||||||| | |||||||||||||||||||||||||||| | |||| Sbjct 8698 CATTGTTGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCA 8756 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG----CCAGCCAC-CAACCATA 131 | | || |||| | || | ||||||||||||| | || ||| || || Sbjct 8757 ATC-TCGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACACAGAAATCTA 8815 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 ||| |||||||||||| || || ||| ||||| Sbjct 8816 GTC------ACTATTTAGCAGGCTAGAGTATCGCTCGTT 8848 >seq7720 Length=5820 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| | |||| Sbjct 5734 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCA 5792 Query 77 AACT 80 | || Sbjct 5793 ATCT 5796 >seq1384 Length=46289 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||| ||| | |||| ||||||||||||| ||||||||||||| |||| ||| |||| Sbjct 14404 TTAGCCACAGGAATCGCTCCACCAACTAAAAACGGCCATGCACAACCAGCCACCAAATCG 14345 Query 238 AGAAAGAGCTATCAAT 253 |||||||||| ||||| Sbjct 14344 AGAAAGAGCTTTCAAT 14329 >seq5182 Length=11255 Score = 77.0 bits (84), Expect = 5e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||| ||||| |||||||||| || || |||||| | ||| |||| |||| Sbjct 1530 CCAGACAAATCTCTCCATTAACTAAGAACAGCAATTCACCACAAACCACCAAATCGAGAA 1471 Query 242 AGAGCTATCAATCTGTC 258 | |||| |||||||||| Sbjct 1470 AAAGCTTTCAATCTGTC 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796656156435