Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10626 360 3e-97 seq842 311 1e-82 seq13 277 3e-72 seq4830 181 2e-43 seq1188 179 6e-43 seq1077 172 9e-41 seq18312 159 6e-37 seq15410 150 3e-34 seq458 102 1e-19 seq4845 89.7 9e-16 >seq10626 Length=2977 Score = 360 bits (398), Expect = 3e-97 Identities = 259/295 (88%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 1686 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 1745 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1746 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 1805 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1806 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1865 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1866 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 1925 Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || ||| | |||||||||||||||||| ||||| ||| | || || Sbjct 1926 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 1979 >seq842 Length=65984 Score = 311 bits (344), Expect = 1e-82 Identities = 231/266 (87%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| || ||||||||||||||||| |||| |||| ||||| || | |||||||||||| Sbjct 57347 GTCAATAGAAGGGTAAAACTAACCTGCCTCACGACGATCTAATCC-ACCTCACGTTCCCT 57289 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct 57288 ATTAGTGGGTGAACAATCCAACGCTTGGCGAACTCTGCTTCGCAATGATAGGAAGAGCCG 57229 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 57228 ACATCGAAGGATCAAAAAGCAACGCCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 57169 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATA 268 ||||||| |||||||||| ||||||| || ||| || ||| | |||||||||||| Sbjct 57168 CCTGTGGCAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATA 57110 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 |||||| ||||| ||| | || ||| Sbjct 57109 GGCCACTCTTTCGGGGTCTATACTCA 57084 >seq13 Length=271176 Score = 277 bits (306), Expect = 3e-72 Identities = 214/252 (85%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| || | ||||| |||||||| |||| |||||||| ||||||||||||||||||| Sbjct 158538 GTCAACATTTGGGTAGTGCTAACCTGGCTCACGACGGTCTCAACCCAGCTCACGTTCCCT 158479 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||| |||||||||||||||||| ||||||||| |||| ||| |||||||||||| Sbjct 158478 ATTAGTGCGTGAACAATCCAACGCTTGGCGAATTCTGATTCGCAATGGTAGGAAGAGCCG 158419 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||||||| Sbjct 158418 ACATCGAAGGATGAAAAAGCAACGTCGCTAAGGACGCTTGTCTGCCACAAGCCAGTTATC 158359 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATA 268 |||||||| ||||||| ||| ||| || ||| || ||| | |||||||||||| Sbjct 158358 TCTGTGGTAGATTTTCTGACACTTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATA 158300 Query 269 GGCCACACTTTC 280 |||||| | ||| Sbjct 158299 GGCCACGCCTTC 158288 >seq4830 Length=12499 Score = 181 bits (200), Expect = 2e-43 Identities = 169/212 (80%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGC-GACGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| || | | ||| |||| |||| |||| Sbjct 3154 TACTAAGCAGGATTACTATCGTAACAGTATGTCAACAATTGTGTAGAACTGACCTCTCTC 3213 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA-CAATCCAACGCTTACC 118 | |||| | |||| |||||||||||||||||||||||| || || || || || | | Sbjct 3214 ACGACGCTTTAAATCCAGCTCACGTTCCCTATTAGTGGATGGGGCATTCAAATGCATGGC 3273 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||| | |||| | ||||| || ||||||||| ||||||||||||||||||| Sbjct 3274 GAATTCTGCTTTGCAATGAAAAGAAGAACCCACATCGAAGAATCAAAAAGCAACGTCGCT 3333 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||| ||||||||||||| ||| Sbjct 3334 ATGGACGCTTGGCTTCCACAAGCCAGTTGTCC 3365 >seq1188 Length=52367 Score = 179 bits (198), Expect = 6e-43 Identities = 194/252 (77%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||| | | |||||||||||||| ||| || ||||||| ||||||| |||| || Sbjct 10111 GTCAACAGAACGATAAAACTAACCTGTTTCACGAAGGTCTAAGCCCAGCTTACGTATGCT 10052 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 || ||||| |||| ||| ||||||||| | || |||| || | ||| | | ||| Sbjct 10051 ATCAGTGGATGAATAATTCAACGCTTAGC-AAGTCTGTTTTGTAGCAATAAAACTATCCG 9993 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||| ||||||||||||||| ||| || ||| | ||||| || | | | Sbjct 9992 ACATCGAAGGATCAAAGAGCAACGTCGCTATGGACG-TTAGCTACTACAAGACAATAACC 9934 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA-AAGGATCGATA 268 | |||||||||||||||| ||||||| || ||| | | || || ||||||||||| Sbjct 9933 CTTGTGGTAACTTTTCTGACACCTCTCACCGGAAACTAC-CTCGATTAGAAGGATCGATA 9875 Query 269 GGCCACACTTTC 280 ||||| |||| Sbjct 9874 AGCCACGTTTTC 9863 >seq1077 Length=56232 Score = 172 bits (190), Expect = 9e-41 Identities = 188/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 ||||| | |||| ||| || ||||| ||||||| |||||||| || |||| | | | Sbjct 25427 AAACTCTCATGTCATATGTATGTTTAAACTCAGCTCATGTTCCCTAATAATGGGAGTAGA 25368 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 |||||||| | ||||||||||||| || | | ||||| |||||||||||| ||||| Sbjct 25367 GTCCAACGCATGACGAATTCTGCTTCACAATAAAATGAAGAACCGACATCGAAGAATCAA 25308 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 | ||||||||||||||| ||||||||||| || |||| ||||||||||||| | || || Sbjct 25307 AGAGCAACGTCGCTATGGACGCTTGGCTGTCATAAGCTAGTTATCCCTGTGACAGCTCTT 25248 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 || ||||||| | || | ||| ||| ||||||| ||||| ||||| || Sbjct 25247 TTGACACCTCTTACGAAAACCTCTTTGGGTTAAAATAATCGATATGCCACTCTTTCGCGG 25188 Query 285 TTTGTATTCA 294 | | || ||| Sbjct 25187 TCTATACTCA 25178 >seq18312 Length=538 Score = 159 bits (176), Expect = 6e-37 Identities = 122/142 (86%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 538 TCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCT 479 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGC 271 ||||||||||||||| || |||| || ||| || ||| | ||||||||||||||| Sbjct 478 GTGGTAACTTTTCTGACATCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATAGGC 420 Query 272 CACACTTTCATGGTTTGTATTC 293 ||| ||||| ||| | || || Sbjct 419 CACGCTTTCGCGGTCTATACTC 398 >seq15410 Length=1139 Score = 150 bits (166), Expect = 3e-34 Identities = 95/103 (92%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||||||| |||| | |||||||||||||||||||||||||||||||||||||| || || Sbjct 883 TGCTTCGCAATGAAATGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTGTGGAC 824 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||| || ||||||||||||||||||||||||||||| Sbjct 823 GCTTGGCTGCAACGAGCCAGTTATCCCTGTGGTAACTTTTCTG 781 >seq458 Length=90741 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 86805 TTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATACGAA 86864 Query 144 GAGCCGACATC 154 |||||||| || Sbjct 86865 GAGCCGACGTC 86875 >seq4845 Length=12434 Score = 89.7 bits (98), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 9/147 (6%) Strand=Plus/Plus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||| || | | || |||||| ||| ||||| ||||| | |||||| ||||| Sbjct 11080 CCGACATGGAGG--TTAAGAAGCAATGTCACTATGGTTACTTGGTTTCCACAAATCAGTT 11137 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA--AATTTCGAGGGACT-AAAGGAT 263 |||| |||||||||||||||| ||| | | || | |||| ||| | ||||||| Sbjct 11138 ATCCATGTGGTAACTTTTCTGACACTTTTTACCAAAGCCATTT----GGATTAAAAGGAT 11193 Query 264 CGATAGGCCACACTTTCATGGTTTGTA 290 |||||| |||| ||||| |||| |||| Sbjct 11194 CGATAGCCCACGCTTTCGTGGTCTGTA 11220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854240782560