Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq10626 360 3e-97
seq842 311 1e-82
seq13 277 3e-72
seq4830 181 2e-43
seq1188 179 6e-43
seq1077 172 9e-41
seq18312 159 6e-37
seq15410 150 3e-34
seq458 102 1e-19
seq4845 89.7 9e-16
>seq10626
Length=2977
Score = 360 bits (398), Expect = 3e-97
Identities = 259/295 (88%), Gaps = 3/295 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || | | | |||| |||||||||||||||||||||||||
Sbjct 1686 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 1745
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1746 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 1805
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1865
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1866 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 1925
Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||| || ||| | |||||||||||||||||| ||||| ||| | || ||
Sbjct 1926 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 1979
>seq842
Length=65984
Score = 311 bits (344), Expect = 1e-82
Identities = 231/266 (87%), Gaps = 3/266 (1%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| || ||||||||||||||||| |||| |||| ||||| || | ||||||||||||
Sbjct 57347 GTCAATAGAAGGGTAAAACTAACCTGCCTCACGACGATCTAATCC-ACCTCACGTTCCCT 57289
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 57288 ATTAGTGGGTGAACAATCCAACGCTTGGCGAACTCTGCTTCGCAATGATAGGAAGAGCCG 57229
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 57228 ACATCGAAGGATCAAAAAGCAACGCCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 57169
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATA 268
||||||| |||||||||| ||||||| || ||| || ||| | ||||||||||||
Sbjct 57168 CCTGTGGCAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATA 57110
Query 269 GGCCACACTTTCATGGTTTGTATTCA 294
|||||| ||||| ||| | || |||
Sbjct 57109 GGCCACTCTTTCGGGGTCTATACTCA 57084
>seq13
Length=271176
Score = 277 bits (306), Expect = 3e-72
Identities = 214/252 (85%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| || | ||||| |||||||| |||| |||||||| |||||||||||||||||||
Sbjct 158538 GTCAACATTTGGGTAGTGCTAACCTGGCTCACGACGGTCTCAACCCAGCTCACGTTCCCT 158479
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||| |||||||||||||||||| ||||||||| |||| ||| ||||||||||||
Sbjct 158478 ATTAGTGCGTGAACAATCCAACGCTTGGCGAATTCTGATTCGCAATGGTAGGAAGAGCCG 158419
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||| ||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 158418 ACATCGAAGGATGAAAAAGCAACGTCGCTAAGGACGCTTGTCTGCCACAAGCCAGTTATC 158359
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATA 268
|||||||| ||||||| ||| ||| || ||| || ||| | ||||||||||||
Sbjct 158358 TCTGTGGTAGATTTTCTGACACTTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATA 158300
Query 269 GGCCACACTTTC 280
|||||| | |||
Sbjct 158299 GGCCACGCCTTC 158288
>seq4830
Length=12499
Score = 181 bits (200), Expect = 2e-43
Identities = 169/212 (80%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGC-GACGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || | | | |||| || | | ||| |||| |||| ||||
Sbjct 3154 TACTAAGCAGGATTACTATCGTAACAGTATGTCAACAATTGTGTAGAACTGACCTCTCTC 3213
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA-CAATCCAACGCTTACC 118
| |||| | |||| |||||||||||||||||||||||| || || || || || | |
Sbjct 3214 ACGACGCTTTAAATCCAGCTCACGTTCCCTATTAGTGGATGGGGCATTCAAATGCATGGC 3273
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
||||||||||| | |||| | ||||| || ||||||||| |||||||||||||||||||
Sbjct 3274 GAATTCTGCTTTGCAATGAAAAGAAGAACCCACATCGAAGAATCAAAAAGCAACGTCGCT 3333
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||||||| ||||||||||||| |||
Sbjct 3334 ATGGACGCTTGGCTTCCACAAGCCAGTTGTCC 3365
>seq1188
Length=52367
Score = 179 bits (198), Expect = 6e-43
Identities = 194/252 (77%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| ||| | | |||||||||||||| ||| || ||||||| ||||||| |||| ||
Sbjct 10111 GTCAACAGAACGATAAAACTAACCTGTTTCACGAAGGTCTAAGCCCAGCTTACGTATGCT 10052
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|| ||||| |||| ||| ||||||||| | || |||| || | ||| | | |||
Sbjct 10051 ATCAGTGGATGAATAATTCAACGCTTAGC-AAGTCTGTTTTGTAGCAATAAAACTATCCG 9993
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||| ||||||||||||||| ||| || ||| | ||||| || | | |
Sbjct 9992 ACATCGAAGGATCAAAGAGCAACGTCGCTATGGACG-TTAGCTACTACAAGACAATAACC 9934
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA-AAGGATCGATA 268
| |||||||||||||||| ||||||| || ||| | | || || |||||||||||
Sbjct 9933 CTTGTGGTAACTTTTCTGACACCTCTCACCGGAAACTAC-CTCGATTAGAAGGATCGATA 9875
Query 269 GGCCACACTTTC 280
||||| ||||
Sbjct 9874 AGCCACGTTTTC 9863
>seq1077
Length=56232
Score = 172 bits (190), Expect = 9e-41
Identities = 188/250 (75%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104
||||| | |||| ||| || ||||| ||||||| |||||||| || |||| | | |
Sbjct 25427 AAACTCTCATGTCATATGTATGTTTAAACTCAGCTCATGTTCCCTAATAATGGGAGTAGA 25368
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
|||||||| | ||||||||||||| || | | ||||| |||||||||||| |||||
Sbjct 25367 GTCCAACGCATGACGAATTCTGCTTCACAATAAAATGAAGAACCGACATCGAAGAATCAA 25308
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
| ||||||||||||||| ||||||||||| || |||| ||||||||||||| | || ||
Sbjct 25307 AGAGCAACGTCGCTATGGACGCTTGGCTGTCATAAGCTAGTTATCCCTGTGACAGCTCTT 25248
Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
|| ||||||| | || | ||| ||| ||||||| ||||| ||||| ||
Sbjct 25247 TTGACACCTCTTACGAAAACCTCTTTGGGTTAAAATAATCGATATGCCACTCTTTCGCGG 25188
Query 285 TTTGTATTCA 294
| | || |||
Sbjct 25187 TCTATACTCA 25178
>seq18312
Length=538
Score = 159 bits (176), Expect = 6e-37
Identities = 122/142 (86%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 TCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCT 479
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGC 271
||||||||||||||| || |||| || ||| || ||| | |||||||||||||||
Sbjct 478 GTGGTAACTTTTCTGACATCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATAGGC 420
Query 272 CACACTTTCATGGTTTGTATTC 293
||| ||||| ||| | || ||
Sbjct 419 CACGCTTTCGCGGTCTATACTC 398
>seq15410
Length=1139
Score = 150 bits (166), Expect = 3e-34
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184
||||||| |||| | |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 883 TGCTTCGCAATGAAATGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTGTGGAC 824
Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
|||||||||| || |||||||||||||||||||||||||||||
Sbjct 823 GCTTGGCTGCAACGAGCCAGTTATCCCTGTGGTAACTTTTCTG 781
>seq458
Length=90741
Score = 102 bits (112), Expect = 1e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 86805 TTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATACGAA 86864
Query 144 GAGCCGACATC 154
|||||||| ||
Sbjct 86865 GAGCCGACGTC 86875
>seq4845
Length=12434
Score = 89.7 bits (98), Expect = 9e-16
Identities = 110/147 (75%), Gaps = 9/147 (6%)
Strand=Plus/Plus
Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
||||||| || | | || |||||| ||| ||||| ||||| | |||||| |||||
Sbjct 11080 CCGACATGGAGG--TTAAGAAGCAATGTCACTATGGTTACTTGGTTTCCACAAATCAGTT 11137
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA--AATTTCGAGGGACT-AAAGGAT 263
|||| |||||||||||||||| ||| | | || | |||| ||| | |||||||
Sbjct 11138 ATCCATGTGGTAACTTTTCTGACACTTTTTACCAAAGCCATTT----GGATTAAAAGGAT 11193
Query 264 CGATAGGCCACACTTTCATGGTTTGTA 290
|||||| |||| ||||| |||| ||||
Sbjct 11194 CGATAGCCCACGCTTTCGTGGTCTGTA 11220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854240782560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |