Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq10626 190 4e-46
seq7720 179 7e-43
seq383 168 1e-39
seq13 149 1e-33
seq4099 118 2e-24
>seq10626
Length=2977
Score = 190 bits (210), Expect = 4e-46
Identities = 233/311 (75%), Gaps = 8/311 (3%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTT-TGGCGGGTCGCCGGCTTCTTA 78
||||||||| || |||||||||||| | | | || | | | | | | |||||||
Sbjct 930 GAGCGAGACTCTAGCCTGCTAAATAGTGA--CTAGATTATTGAGTCTAGTCTACTTCTTA 873
Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137
|||||| | ||| | ||||| || | ||||| | |||||||||||||||||||||
Sbjct 872 GAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCCT 815
Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197
||||||| | |||| |||||||||||||| || ||| || | | ||| | | ||
Sbjct 814 TAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAGCTGGCCTATC--CATTGC 757
Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257
|| ||||| | ||||| | | ||||||| |||| ||||||| | |||| ||||||
Sbjct 756 CGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATTAT 697
Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317
| | ||| |||||||||| ||||||||| | | ||||||||| | || ||||||||||||
Sbjct 696 TTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCC 637
Query 318 TGCCCTTTGTA 328
|||| ||||||
Sbjct 636 TGCCATTTGTA 626
>seq7720
Length=5820
Score = 179 bits (198), Expect = 7e-43
Identities = 175/223 (78%), Gaps = 3/223 (1%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| | |||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 5796 AGATTGAG-CGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 5738
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| || ||| || | | ||| | | |||| ||||| | ||||| | | |||||
Sbjct 5737 AATGGAAGAATCAGCTGGCCTATC--CATTGCCGAAAGGTATTGGTAAACCGTTGAAACT 5680
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| |||| ||||||| | |||| ||||||| | ||| |||||||||| |||||||||
Sbjct 5679 CTTCCGTGACCGGGATAGGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTAGTAAG 5620
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||||||| | || |||||||||||||||| ||||||
Sbjct 5619 TGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 5577
>seq383
Length=99270
Score = 168 bits (186), Expect = 1e-39
Identities = 195/258 (76%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | ||| | ||||| || | ||||| | ||||||||||||||
Sbjct 8794 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 8737
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | ||||||||||||||| ||| || ||| ||| | | |||
Sbjct 8736 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCAACAATGGAAGAACCAGCTGGCCTATC- 8678
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
| | |||| ||||| | ||||| | | ||||||| |||| ||||||| | ||||
Sbjct 8677 -CATTGCCGTAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTG 8619
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
| ||||| | ||| |||||||||| || |||||| | | ||||| ||| | || |||||
Sbjct 8618 TAGTTATTTCCCTTGAACGAGGAATTCCCAGTAAGTGTGAGTCATTAGCTCACGCTGATT 8559
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||| | ||| ||
Sbjct 8558 ACGTCCCTGTCATTTATA 8541
>seq13
Length=271176
Score = 149 bits (164), Expect = 1e-33
Identities = 168/223 (75%), Gaps = 3/223 (1%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| | ||| |||||||||||||||||||| ||||| | || |||| |||| |||
Sbjct 156517 AGGTTGAG-CGATAGCAGGTCTGTGATGCCCTTAGGTGTTCGGAGCTGCACACGCGTTAC 156459
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| || ||| || | | ||| || |||| ||||| | ||||| | |||||
Sbjct 156458 AATGGAAGAATCAGCTGGCCAATCCACT--GCCGAAAGGTATTGGTAAACCGTCAAAACT 156401
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| |||| ||||||| | |||||||||||| | || |||||||||| ||||| |||
Sbjct 156400 ATTCCGTGGCCGGGATAGGGAATTGCAATTATTTCCCTGGAACGAGGAATTCCTAGAAAG 156341
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| | ||||||||| | || ||||||||| |||||| ||||||
Sbjct 156340 CGTGAGTCATCAGCTCACGCTGATTACGTACCTGCCATTTGTA 156298
>seq4099
Length=15255
Score = 118 bits (130), Expect = 2e-24
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
|||| ||||| | ||||| | | ||||||| |||| ||||||| | |||| ||||
Sbjct 14661 GCCGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATT 14602
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||| | ||| |||||||||| ||||||||| | | ||||||||| | || ||||||||||
Sbjct 14601 ATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTC 14542
Query 316 CCTGCCCTTTGTA 328
|||||| ||||||
Sbjct 14541 CCTGCCATTTGTA 14529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947023489280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |