Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10626 190 4e-46 seq7720 179 7e-43 seq383 168 1e-39 seq13 149 1e-33 seq4099 118 2e-24 >seq10626 Length=2977 Score = 190 bits (210), Expect = 4e-46 Identities = 233/311 (75%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTT-TGGCGGGTCGCCGGCTTCTTA 78 ||||||||| || |||||||||||| | | | || | | | | | | ||||||| Sbjct 930 GAGCGAGACTCTAGCCTGCTAAATAGTGA--CTAGATTATTGAGTCTAGTCTACTTCTTA 873 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||| | ||| | ||||| || | ||||| | ||||||||||||||||||||| Sbjct 872 GAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCCT 815 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| | |||| |||||||||||||| || ||| || | | ||| | | || Sbjct 814 TAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAGCTGGCCTATC--CATTGC 757 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || ||||| | ||||| | | ||||||| |||| ||||||| | |||| |||||| Sbjct 756 CGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATTAT 697 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 | | ||| |||||||||| ||||||||| | | ||||||||| | || |||||||||||| Sbjct 696 TTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCC 637 Query 318 TGCCCTTTGTA 328 |||| |||||| Sbjct 636 TGCCATTTGTA 626 >seq7720 Length=5820 Score = 179 bits (198), Expect = 7e-43 Identities = 175/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | |||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 5796 AGATTGAG-CGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 5738 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || ||| || | | ||| | | |||| ||||| | ||||| | | ||||| Sbjct 5737 AATGGAAGAATCAGCTGGCCTATC--CATTGCCGAAAGGTATTGGTAAACCGTTGAAACT 5680 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || |||| ||||||| | |||| ||||||| | ||| |||||||||| ||||||||| Sbjct 5679 CTTCCGTGACCGGGATAGGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTAGTAAG 5620 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||||||| | || |||||||||||||||| |||||| Sbjct 5619 TGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 5577 >seq383 Length=99270 Score = 168 bits (186), Expect = 1e-39 Identities = 195/258 (76%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 8794 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 8737 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||| ||| || ||| ||| | | ||| Sbjct 8736 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCAACAATGGAAGAACCAGCTGGCCTATC- 8678 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | |||| ||||| | ||||| | | ||||||| |||| ||||||| | |||| Sbjct 8677 -CATTGCCGTAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTG 8619 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 | ||||| | ||| |||||||||| || |||||| | | ||||| ||| | || ||||| Sbjct 8618 TAGTTATTTCCCTTGAACGAGGAATTCCCAGTAAGTGTGAGTCATTAGCTCACGCTGATT 8559 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||||| | ||| || Sbjct 8558 ACGTCCCTGTCATTTATA 8541 >seq13 Length=271176 Score = 149 bits (164), Expect = 1e-33 Identities = 168/223 (75%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | ||| |||||||||||||||||||| ||||| | || |||| |||| ||| Sbjct 156517 AGGTTGAG-CGATAGCAGGTCTGTGATGCCCTTAGGTGTTCGGAGCTGCACACGCGTTAC 156459 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || ||| || | | ||| || |||| ||||| | ||||| | ||||| Sbjct 156458 AATGGAAGAATCAGCTGGCCAATCCACT--GCCGAAAGGTATTGGTAAACCGTCAAAACT 156401 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | |||| ||||||| | |||||||||||| | || |||||||||| ||||| ||| Sbjct 156400 ATTCCGTGGCCGGGATAGGGAATTGCAATTATTTCCCTGGAACGAGGAATTCCTAGAAAG 156341 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | ||||||||| | || ||||||||| |||||| |||||| Sbjct 156340 CGTGAGTCATCAGCTCACGCTGATTACGTACCTGCCATTTGTA 156298 >seq4099 Length=15255 Score = 118 bits (130), Expect = 2e-24 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||||| | ||||| | | ||||||| |||| ||||||| | |||| |||| Sbjct 14661 GCCGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATT 14602 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | ||| |||||||||| ||||||||| | | ||||||||| | || |||||||||| Sbjct 14601 ATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTC 14542 Query 316 CCTGCCCTTTGTA 328 |||||| |||||| Sbjct 14541 CCTGCCATTTGTA 14529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947023489280