Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10626 462 7e-128 seq148 172 2e-40 seq13 149 2e-33 seq19 145 2e-32 seq18312 118 3e-24 seq2386 107 6e-21 seq842 102 3e-19 >seq10626 Length=2977 Score = 462 bits (512), Expect = 7e-128 Identities = 429/540 (79%), Gaps = 27/540 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 2013 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 2072 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| |||||||||||| || | | || Sbjct 2073 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 2132 Query 127 GGCCCG---CGAAG-GAC----CTTAACGCCAGAAAATG----GTCGGTGAAGACCAGTT 174 | | | | | ||| |||||| | | |||| |||| | || || || Sbjct 2133 GTAATGTCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCG-TAAAACTCAATT 2191 Query 175 C-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT---------- 223 | | || | || |||||||| || |||| | || ||||||||||| | Sbjct 2192 CTCTTTTTACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATG 2251 Query 224 TGCGCCGAAACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 ||||| | || ||||||| ||| |||||||||||| | ||||||| ||| | Sbjct 2252 TGCGCGAACACACAATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAA 2311 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 2312 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTG 2371 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2372 GCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 2431 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2432 CGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 2491 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||| | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 2492 GTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 2551 >seq148 Length=142514 Score = 172 bits (190), Expect = 2e-40 Identities = 125/145 (86%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| ||| || |||||||||||| | ||||||| ||| ||||||||||||||||| Sbjct 107872 CTCTCACCTACGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCAA 107931 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||| Sbjct 107932 CAGGGTCTTCTTTCTCCGCTATTTTTGCCAAGCCCGTTCCGTTGGCTGTGGTTTCGCTAG 107991 Query 357 ATAGTAGATAGGGACAGTGGGAATC 381 || |||| ||||||||||||||||| Sbjct 107992 ATGGTAGTTAGGGACAGTGGGAATC 108016 >seq13 Length=271176 Score = 149 bits (164), Expect = 2e-33 Identities = 237/348 (68%), Gaps = 49/348 (14%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA------AACGG-- 236 || ||||||||||| |||| | ||| ||||||||||| | || | |||| Sbjct 158058 GAATAAGTAAAAAATCGATGAAGGTGGTGGTATTTCATTGACGATCACATGCGAACGCGA 157999 Query 237 -CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| || |||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 157998 TCTCCCACCCATGCTACACCTCTAATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCA 157939 Query 296 ACAG---GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||| ||| |||||| ||||| || |||||| |||| ||||||| ||| || Sbjct 157938 ACAGAATCGTCGTCTTTCTCCGCTACTTTTACCAAGCGTGTTCTTCTGGCTGTAGTTCCG 157879 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||| || ||| || ||||| ||| Sbjct 157878 CTAGATAGGAGTTAGCGAAAGTGG---------------------------------TTA 157852 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | ||||||||||||||||||||| ||||||||||||| || | |||||||| |||| Sbjct 157851 GCCGACGAGGCATTTGGCTACCTT----GAGTCATAGTTACACCTGTCGTTTACCTGCGC 157796 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || | |||| || | ||| |||| || ||||| |||| ||||||| Sbjct 157795 TTACTCAAATTGCTACGATTTAACATCCAAAGCACCGGGCGGAAATCA 157748 >seq19 Length=235157 Score = 145 bits (160), Expect = 2e-32 Identities = 260/368 (71%), Gaps = 20/368 (5%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||||||| || || ||||||| ||| |||| || || |||||| | ||| | Sbjct 214799 TTTTGCTCAACGAGAAGTTTCTGTCCTCTCTGAGCTAGCCCTAATACACCTACTTTACAG 214858 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| || || || |||| ||| | ||| |||||||| | | | | ||| Sbjct 214859 TTTGACAGATGTACCTCCTCAATCAAAGTCCTCGCCTCACAATGTCTTTAGCAAGAGTCG 214918 Query 128 ----GCC--CGCGAAGGAC--CTTAACGCCAGAAAATG-GTCGGTGAAGACCAGTTCCGC 178 ||| || | | || |||| ||||| |||||| |||| || || ||| | Sbjct 214919 TAATGCCACCGTGTGGCACTACTTA-CGCCAAAAAATGAGTCG---AAACTCAATTCTGT 214974 Query 179 TT-CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAACGG 236 || || || ||| |||| | |||| | || ||| | ||| | ||| ||| || Sbjct 214975 TTTCACCGACTAACTAAAGGATCGATGAAAGTGGTGCTGTTTAATCGGCGTTCGATACAA 215034 Query 237 -CTCCCACTTATTCTACACCTCTCAAGTCAT--TTCACAAAGTCGGACTAGAGTCAAGCT 293 || || ||| |||||||||||| |||| ||||||| ||| |||| ||||||||| Sbjct 215035 TCTTTTACGTATACTACACCTCTCA--TCATTCTTCACAATGTCAAACTAAAGTCAAGCT 215092 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||| |||| || |||||||||||||| ||||||||| |||| Sbjct 215093 TAACAGGGTCTTCTTTCCACGCTATTTTTTCCAAGCCCGTTCCCCTGGCTGTGGCTTCGT 215152 Query 354 TAGATAGT 361 | |||||| Sbjct 215153 TTGATAGT 215160 >seq18312 Length=538 Score = 118 bits (130), Expect = 3e-24 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 364 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 305 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||| |||||||| ||||||||| |||||||||| |||||||||||| || Sbjct 304 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTC 255 >seq2386 Length=28382 Score = 107 bits (118), Expect = 6e-21 Identities = 87/101 (86%), Gaps = 7/101 (7%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCT 338 |||||||||| ||||||||||||||||| | || ||| |||| ||||||||||||||| Sbjct 17612 ACTAGAGTCAGGCTCAACAGGGTCTTCTCTTCC-GCT-ATTCTTGCCAAGCCCGTTCCCA 17555 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 ||||||||||||||||||||| || |||||||||||| Sbjct 17554 TGGCTGTGGTTTCGCTAGATA----TTATGGACAGTGGGAA 17518 >seq842 Length=65984 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||||||||||| ||| |||| |||| | |||| ||||||||||||| ||||| Sbjct 57052 TCTTTTGCTCTACGAGAGGTTTCCGTTCACTTTGAGCTAGCCTTAGGACACCTACGTTAC 56993 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 |||| |||||| || |||||| |||||||||| |||||||||||| || || Sbjct 56992 AGTTTGGTAGATGTACCACCCCAGTCAAACTCCCCGCCTGACAATGTCTTCTAC 56939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634895280480