Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq10626 462 7e-128
seq148 172 2e-40
seq13 149 2e-33
seq19 145 2e-32
seq18312 118 3e-24
seq2386 107 6e-21
seq842 102 3e-19
>seq10626
Length=2977
Score = 462 bits (512), Expect = 7e-128
Identities = 429/540 (79%), Gaps = 27/540 (5%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| |||||||||||||||||||
Sbjct 2013 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 2072
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||||||| ||||||||| |||||||||| |||||||||||| || | | ||
Sbjct 2073 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 2132
Query 127 GGCCCG---CGAAG-GAC----CTTAACGCCAGAAAATG----GTCGGTGAAGACCAGTT 174
| | | | | ||| |||||| | | |||| |||| | || || ||
Sbjct 2133 GTAATGTCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCG-TAAAACTCAATT 2191
Query 175 C-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT---------- 223
| | || | || |||||||| || |||| | || ||||||||||| |
Sbjct 2192 CTCTTTTTACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATG 2251
Query 224 TGCGCCGAAACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280
||||| | || ||||||| ||| |||||||||||| | ||||||| ||| |
Sbjct 2252 TGCGCGAACACACAATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAA 2311
Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2312 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTG 2371
Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2372 GCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 2431
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 CGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 2491
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||||||||||| | ||||| || | ||| ||||||||||||||||||||||||||
Sbjct 2492 GTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 2551
>seq148
Length=142514
Score = 172 bits (190), Expect = 2e-40
Identities = 125/145 (86%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||| ||| || |||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 107872 CTCTCACCTACGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCAA 107931
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 107932 CAGGGTCTTCTTTCTCCGCTATTTTTGCCAAGCCCGTTCCGTTGGCTGTGGTTTCGCTAG 107991
Query 357 ATAGTAGATAGGGACAGTGGGAATC 381
|| |||| |||||||||||||||||
Sbjct 107992 ATGGTAGTTAGGGACAGTGGGAATC 108016
>seq13
Length=271176
Score = 149 bits (164), Expect = 2e-33
Identities = 237/348 (68%), Gaps = 49/348 (14%)
Strand=Plus/Minus
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA------AACGG-- 236
|| ||||||||||| |||| | ||| ||||||||||| | || | ||||
Sbjct 158058 GAATAAGTAAAAAATCGATGAAGGTGGTGGTATTTCATTGACGATCACATGCGAACGCGA 157999
Query 237 -CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||| || |||||||||| | | ||||||| ||| ||||||||||||||||
Sbjct 157998 TCTCCCACCCATGCTACACCTCTAATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCA 157939
Query 296 ACAG---GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352
|||| ||| |||||| ||||| || |||||| |||| ||||||| ||| ||
Sbjct 157938 ACAGAATCGTCGTCTTTCTCCGCTACTTTTACCAAGCGTGTTCTTCTGGCTGTAGTTCCG 157879
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
|||||||| || ||| || ||||| |||
Sbjct 157878 CTAGATAGGAGTTAGCGAAAGTGG---------------------------------TTA 157852
Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472
| ||||||||||||||||||||| ||||||||||||| || | |||||||| ||||
Sbjct 157851 GCCGACGAGGCATTTGGCTACCTT----GAGTCATAGTTACACCTGTCGTTTACCTGCGC 157796
Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|| | |||| || | ||| |||| || ||||| |||| |||||||
Sbjct 157795 TTACTCAAATTGCTACGATTTAACATCCAAAGCACCGGGCGGAAATCA 157748
>seq19
Length=235157
Score = 145 bits (160), Expect = 2e-32
Identities = 260/368 (71%), Gaps = 20/368 (5%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|||||||| || || ||||||| ||| |||| || || |||||| | ||| |
Sbjct 214799 TTTTGCTCAACGAGAAGTTTCTGTCCTCTCTGAGCTAGCCCTAATACACCTACTTTACAG 214858
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||| |||||||| || || || |||| ||| | ||| |||||||| | | | | |||
Sbjct 214859 TTTGACAGATGTACCTCCTCAATCAAAGTCCTCGCCTCACAATGTCTTTAGCAAGAGTCG 214918
Query 128 ----GCC--CGCGAAGGAC--CTTAACGCCAGAAAATG-GTCGGTGAAGACCAGTTCCGC 178
||| || | | || |||| ||||| |||||| |||| || || ||| |
Sbjct 214919 TAATGCCACCGTGTGGCACTACTTA-CGCCAAAAAATGAGTCG---AAACTCAATTCTGT 214974
Query 179 TT-CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAACGG 236
|| || || ||| |||| | |||| | || ||| | ||| | ||| ||| ||
Sbjct 214975 TTTCACCGACTAACTAAAGGATCGATGAAAGTGGTGCTGTTTAATCGGCGTTCGATACAA 215034
Query 237 -CTCCCACTTATTCTACACCTCTCAAGTCAT--TTCACAAAGTCGGACTAGAGTCAAGCT 293
|| || ||| |||||||||||| |||| ||||||| ||| |||| |||||||||
Sbjct 215035 TCTTTTACGTATACTACACCTCTCA--TCATTCTTCACAATGTCAAACTAAAGTCAAGCT 215092
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||||||||||||||| |||| || |||||||||||||| ||||||||| ||||
Sbjct 215093 TAACAGGGTCTTCTTTCCACGCTATTTTTTCCAAGCCCGTTCCCCTGGCTGTGGCTTCGT 215152
Query 354 TAGATAGT 361
| ||||||
Sbjct 215153 TTGATAGT 215160
>seq18312
Length=538
Score = 118 bits (130), Expect = 3e-24
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| |||||||||||||||||||
Sbjct 364 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 305
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||| |||||||| ||||||||| |||||||||| |||||||||||| ||
Sbjct 304 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTC 255
>seq2386
Length=28382
Score = 107 bits (118), Expect = 6e-21
Identities = 87/101 (86%), Gaps = 7/101 (7%)
Strand=Plus/Minus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCT 338
|||||||||| ||||||||||||||||| | || ||| |||| |||||||||||||||
Sbjct 17612 ACTAGAGTCAGGCTCAACAGGGTCTTCTCTTCC-GCT-ATTCTTGCCAAGCCCGTTCCCA 17555
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379
||||||||||||||||||||| || ||||||||||||
Sbjct 17554 TGGCTGTGGTTTCGCTAGATA----TTATGGACAGTGGGAA 17518
>seq842
Length=65984
Score = 102 bits (112), Expect = 3e-19
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||||||||||| ||| |||| |||| | |||| ||||||||||||| |||||
Sbjct 57052 TCTTTTGCTCTACGAGAGGTTTCCGTTCACTTTGAGCTAGCCTTAGGACACCTACGTTAC 56993
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119
|||| |||||| || |||||| |||||||||| |||||||||||| || ||
Sbjct 56992 AGTTTGGTAGATGTACCACCCCAGTCAAACTCCCCGCCTGACAATGTCTTCTAC 56939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634895280480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |