Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq994 244 3e-62
seq1088 208 2e-51
seq6267 156 1e-35
seq5270 125 2e-26
seq3936 105 2e-20
seq68 95.1 4e-17
>seq994
Length=59397
Score = 244 bits (270), Expect = 3e-62
Identities = 332/452 (73%), Gaps = 21/452 (5%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 8844 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 8785
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||
Sbjct 8784 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 8725
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| |||||||||| | | || |||||||| | |||||||||||||| | ||
Sbjct 8724 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 8667
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281
| | |||| | | |||| | |||| | | |||||| || ||| | ||
Sbjct 8666 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 8610
Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341
| ||||| ||| ||| |||||||| | ||||| ||| ||||| ||||||
Sbjct 8609 ACATCCGAAAATGATTG--ATTTGCTCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTA 8552
Query 342 TA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
|| |||||||||||||| ||||||||| | |||||||| ||| | | ||||
Sbjct 8551 TACGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 8497
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
|| | | ||| | ||||||||| |||||||||||||| || | ||| | || |
Sbjct 8496 AATCACATCTGCTCTAATGAGCCGTTCGCAGTTTCACT-TAAA----GCTGA-AC-TCCT 8444
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492
||||||||||||||||||| | |||||||
Sbjct 8443 CATGCATGGCTTAATCTTTTAACTGAGCATAT 8412
>seq1088
Length=55739
Score = 208 bits (230), Expect = 2e-51
Identities = 289/398 (73%), Gaps = 14/398 (4%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 15796 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 15737
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||||| || |||||| |||| ||||||
Sbjct 15736 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCCAACCCTTATTCTCCGTTA 15677
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| |||||||||| | | || |||||||| | |||||||||||||| | ||
Sbjct 15676 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 15619
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281
| | |||| | | |||| | |||| | | |||||| || ||| | ||
Sbjct 15618 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 15562
Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341
| ||||| ||| || ||||||| | ||||| ||| ||||| |||||
Sbjct 15561 ACATCCGAAAATGATTG--ACTTGCCCTAATAATTGCACCCTTTCGAAAGTCAAGGTTTA 15504
Query 342 TA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
| ||||||||||||| ||||||||| | |||||||| ||| | | ||||
Sbjct 15503 CACACATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 15449
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438
|| | | ||| | ||||||||| ||||||||||||||
Sbjct 15448 AATCACATCTGCTCTAATGAGCCGTTCGCAGTTTCACT 15411
>seq6267
Length=8469
Score = 156 bits (172), Expect = 1e-35
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|||||| ||| || ||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 5544 GATTGGATAAGTTTCGCGCCTGCTGTCTTTCTTGGATGTGGTAGCCGTTTCTAAGGCTCC 5485
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
||||||||| ||||||||| |||| ||||||||||| ||| |||||| | | | |
Sbjct 5484 CTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAATAACCGTGGTAGACTAATGCAC 5425
Query 192 TACCATCGAAAGTTGATAGGGCAGA 216
||||||| | ||||||||||||||
Sbjct 5424 TACCATC--AGGTTGATAGGGCAGA 5402
>seq5270
Length=10992
Score = 125 bits (138), Expect = 2e-26
Identities = 107/130 (82%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146
|||||||||||||| |||||||||||||||||||||| |||| |||| |||||| |||||
Sbjct 8749 GCGCCTGCTGCCTTTCTTGGATGTGGTAGCCGTTTCTAAGGC-CCCTTTCCGGAGTCGAA 8807
Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206
|| | |||| |||||||| || |||||||||| | || |||||||| | |||
Sbjct 8808 CCGTTATTCTCCGTTACCAGTAATAACCATGGTAGACTGATAGACTACCATC--AGGTTA 8865
Query 207 ATAGGGCAGA 216
||||||||||
Sbjct 8866 ATAGGGCAGA 8875
>seq3936
Length=16022
Score = 105 bits (116), Expect = 2e-20
Identities = 139/187 (74%), Gaps = 13/187 (7%)
Strand=Plus/Plus
Query 307 TCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTA 365
|||||||| | ||||| ||| ||||| |||||| || |||||||||||||| |||||||
Sbjct 7619 TCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTATACGCATGTATTAGCTCCAGAATTA 7678
Query 366 CCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425
|| | |||||||| ||| | | |||||| | | ||| | ||||||||| |
Sbjct 7679 CCGCAGTTATCCA-----ATAGGATTTTCCGAATAAATCACATCTGCTCTAATGAGCCGT 7733
Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485
||||||||||||| || | ||| | || | ||||||||||||||||||| |
Sbjct 7734 TCGCAGTTTCACT-TAAA----GCTGA-AC-TCCTCATGCATGGCTTAATCTTTTAACTG 7786
Query 486 AGCATAT 492
|||||||
Sbjct 7787 AGCATAT 7793
>seq68
Length=177362
Score = 95.1 bits (104), Expect = 4e-17
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
||| || ||| ||||||||||| ||||||||||| |||||||||| ||||||||||| ||
Sbjct 174916 TAAGTTTCGCACCTGCTGCCTTTCTTGGATGTGGCAGCCGTTTCTAAGGCTCCCTCTACG 174975
Query 139 GAATCGAACCCTAAT 153
||||||||| || ||
Sbjct 174976 GAATCGAACTCTTAT 174990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510118536960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |