Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq994 244 3e-62 seq1088 208 2e-51 seq6267 156 1e-35 seq5270 125 2e-26 seq3936 105 2e-20 seq68 95.1 4e-17 >seq994 Length=59397 Score = 244 bits (270), Expect = 3e-62 Identities = 332/452 (73%), Gaps = 21/452 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 8844 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 8785 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 8784 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 8725 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 8724 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 8667 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281 | | |||| | | |||| | |||| | | |||||| || ||| | || Sbjct 8666 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 8610 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341 | ||||| ||| ||| |||||||| | ||||| ||| ||||| |||||| Sbjct 8609 ACATCCGAAAATGATTG--ATTTGCTCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTA 8552 Query 342 TA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||| ||||||||| | |||||||| ||| | | |||| Sbjct 8551 TACGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 8497 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || | | ||| | ||||||||| |||||||||||||| || | ||| | || | Sbjct 8496 AATCACATCTGCTCTAATGAGCCGTTCGCAGTTTCACT-TAAA----GCTGA-AC-TCCT 8444 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||||||||||||||||||| | ||||||| Sbjct 8443 CATGCATGGCTTAATCTTTTAACTGAGCATAT 8412 >seq1088 Length=55739 Score = 208 bits (230), Expect = 2e-51 Identities = 289/398 (73%), Gaps = 14/398 (4%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 15796 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 15737 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| || |||||| |||| |||||| Sbjct 15736 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCCAACCCTTATTCTCCGTTA 15677 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 15676 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 15619 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281 | | |||| | | |||| | |||| | | |||||| || ||| | || Sbjct 15618 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 15562 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341 | ||||| ||| || ||||||| | ||||| ||| ||||| ||||| Sbjct 15561 ACATCCGAAAATGATTG--ACTTGCCCTAATAATTGCACCCTTTCGAAAGTCAAGGTTTA 15504 Query 342 TA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 | ||||||||||||| ||||||||| | |||||||| ||| | | |||| Sbjct 15503 CACACATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 15449 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438 || | | ||| | ||||||||| |||||||||||||| Sbjct 15448 AATCACATCTGCTCTAATGAGCCGTTCGCAGTTTCACT 15411 >seq6267 Length=8469 Score = 156 bits (172), Expect = 1e-35 Identities = 122/145 (84%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 |||||| ||| || ||||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 5544 GATTGGATAAGTTTCGCGCCTGCTGTCTTTCTTGGATGTGGTAGCCGTTTCTAAGGCTCC 5485 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||||| ||||||||| |||| ||||||||||| ||| |||||| | | | | Sbjct 5484 CTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAATAACCGTGGTAGACTAATGCAC 5425 Query 192 TACCATCGAAAGTTGATAGGGCAGA 216 ||||||| | |||||||||||||| Sbjct 5424 TACCATC--AGGTTGATAGGGCAGA 5402 >seq5270 Length=10992 Score = 125 bits (138), Expect = 2e-26 Identities = 107/130 (82%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 |||||||||||||| |||||||||||||||||||||| |||| |||| |||||| ||||| Sbjct 8749 GCGCCTGCTGCCTTTCTTGGATGTGGTAGCCGTTTCTAAGGC-CCCTTTCCGGAGTCGAA 8807 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 || | |||| |||||||| || |||||||||| | || |||||||| | ||| Sbjct 8808 CCGTTATTCTCCGTTACCAGTAATAACCATGGTAGACTGATAGACTACCATC--AGGTTA 8865 Query 207 ATAGGGCAGA 216 |||||||||| Sbjct 8866 ATAGGGCAGA 8875 >seq3936 Length=16022 Score = 105 bits (116), Expect = 2e-20 Identities = 139/187 (74%), Gaps = 13/187 (7%) Strand=Plus/Plus Query 307 TCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTA 365 |||||||| | ||||| ||| ||||| |||||| || |||||||||||||| ||||||| Sbjct 7619 TCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTATACGCATGTATTAGCTCCAGAATTA 7678 Query 366 CCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 || | |||||||| ||| | | |||||| | | ||| | ||||||||| | Sbjct 7679 CCGCAGTTATCCA-----ATAGGATTTTCCGAATAAATCACATCTGCTCTAATGAGCCGT 7733 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 ||||||||||||| || | ||| | || | ||||||||||||||||||| | Sbjct 7734 TCGCAGTTTCACT-TAAA----GCTGA-AC-TCCTCATGCATGGCTTAATCTTTTAACTG 7786 Query 486 AGCATAT 492 ||||||| Sbjct 7787 AGCATAT 7793 >seq68 Length=177362 Score = 95.1 bits (104), Expect = 4e-17 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || ||| ||||||||||| ||||||||||| |||||||||| ||||||||||| || Sbjct 174916 TAAGTTTCGCACCTGCTGCCTTTCTTGGATGTGGCAGCCGTTTCTAAGGCTCCCTCTACG 174975 Query 139 GAATCGAACCCTAAT 153 ||||||||| || || Sbjct 174976 GAATCGAACTCTTAT 174990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510118536960