Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3834 167 4e-39 seq2581 143 4e-32 >seq3834 Length=8065 Score = 167 bits (184), Expect = 4e-39 Identities = 186/240 (78%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 1620 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 1563 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 1562 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 1503 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | || |||| | ||||| | || |||||||||||||| Sbjct 1502 ACCAATACCTTTCGGCAATGG--ATAGGCCAGTTGATTCTTCCATTGTAGCGCGCGTGCA 1445 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 1444 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 1388 >seq2581 Length=25017 Score = 143 bits (158), Expect = 4e-32 Identities = 183/241 (76%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||| || ||| | ||||| |||||||| | |||| |||||||| | Sbjct 271 GTACAAATGGCAGGGATATAATCAGTGTGAGCT-GATGACTCACACTTAGTAGGAATT-C 328 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC-GATGAAATTTCAAAGATT 119 ||||| ||| || |||| |||| ||||||| |||| || || |||||| | || Sbjct 329 TTCGTTCAAGGAAAATAATTACAATTCCCTATCCCGGTCACAGAAGAG-TTTCAACGGTT 387 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| |||| ||||| | || |||| | ||||| | || |||||||||||||| Sbjct 388 TACCAATACCTTTCGGCAATGG--ATAGGCCAGTTGATTCTTCCATTGTAGCGCGCGTGC 445 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | |||| Sbjct 446 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAA 502 Query 238 A 238 | Sbjct 503 A 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751953492560