Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3834 136 2e-29 seq3052 95.1 5e-17 seq1215 87.8 7e-15 >seq3834 Length=8065 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| |||| |||| Sbjct 4841 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 4900 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||| |||| | || | |||||||| ||||||||||||||| | | || ||| Sbjct 4901 GGAAACTCTGATGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTAGGT 4960 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 4961 ATAGGGGCGA 4970 >seq3052 Length=16588 Score = 95.1 bits (104), Expect = 5e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| |||||||| ||| ||| | |||| ||| |||| ||||| | Sbjct 13758 GAGTCGGGTTGCTTGAAAATGCAGCCTTAAGTGGATGATAAACTTCATCTAGGGCTAAGT 13699 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || ||||||| |||||| |||| ||||| || |||| |||||| | Sbjct 13698 ACGAACGCGAATTCGATAGCAAACAAGTGCTGTGAAGGAAAGTTGCAAAGAACTTTGAAG 13639 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || | |||||||||||||| |||| || Sbjct 13638 AGAGAGTTCAAGAGAATGTGAAATTGTTGAAGTGGAACCG 13599 >seq1215 Length=73107 Score = 87.8 bits (96), Expect = 7e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||| | Sbjct 30957 CCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGTCAGAGGAAACTCTGATGGAAGT 31016 Query 632 TCGCAGCGGTTCT 644 || | ||||||| Sbjct 31017 CCGTATCGGTTCT 31029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079863063200