Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq3834 136 2e-29
seq3052 95.1 5e-17
seq1215 87.8 7e-15
>seq3834
Length=8065
Score = 136 bits (150), Expect = 2e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| |||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 4841 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 4900
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||||||| |||| | || | |||||||| ||||||||||||||| | | || |||
Sbjct 4901 GGAAACTCTGATGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTAGGT 4960
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 4961 ATAGGGGCGA 4970
>seq3052
Length=16588
Score = 95.1 bits (104), Expect = 5e-17
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| |||||||| ||| ||| | |||| ||| |||| ||||| |
Sbjct 13758 GAGTCGGGTTGCTTGAAAATGCAGCCTTAAGTGGATGATAAACTTCATCTAGGGCTAAGT 13699
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| | || ||||||| |||||| |||| ||||| || |||| |||||| |
Sbjct 13698 ACGAACGCGAATTCGATAGCAAACAAGTGCTGTGAAGGAAAGTTGCAAAGAACTTTGAAG 13639
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || | |||||||||||||| |||| ||
Sbjct 13638 AGAGAGTTCAAGAGAATGTGAAATTGTTGAAGTGGAACCG 13599
>seq1215
Length=73107
Score = 87.8 bits (96), Expect = 7e-15
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631
||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||| |
Sbjct 30957 CCCGAAAGATGGTGAACTATGCCTGAACAGGACGAAGTCAGAGGAAACTCTGATGGAAGT 31016
Query 632 TCGCAGCGGTTCT 644
|| | |||||||
Sbjct 31017 CCGTATCGGTTCT 31029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079863063200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |