Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2581 214 3e-53 seq3834 210 3e-52 seq186 127 3e-27 seq2132 122 1e-25 seq254 113 7e-23 seq134 93.3 7e-17 seq1021 89.7 8e-16 seq618 84.2 3e-14 seq672 75.2 2e-11 >seq2581 Length=25017 Score = 214 bits (236), Expect = 3e-53 Identities = 198/245 (81%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 429 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 487 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACC--AACCATAGT 133 | || | |||| | || | |||||||||| || |||| ||| || | |||| Sbjct 488 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGTAGACCAGACACAGTAATC-TAGT 545 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | |||||||||||| || |||||| ||||||||||||| ||||||||||||| Sbjct 546 CA------CTATTTAGCAGGCTATAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCG 599 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| Sbjct 600 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAAT 659 Query 254 CTGTC 258 ||||| Sbjct 660 CTGTC 664 >seq3834 Length=8065 Score = 210 bits (232), Expect = 3e-52 Identities = 194/242 (80%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 1462 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 1404 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | |||| | || | ||||||||||||| | | || || || | Sbjct 1403 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACACAGTAATCTA 1345 Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196 | |||||||||||| || |||||| ||||||||||||| ||||||||||||| ||| Sbjct 1344 -GTCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCTC 1286 Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||| Sbjct 1285 CACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTG 1226 Query 257 TC 258 || Sbjct 1225 TC 1224 >seq186 Length=212611 Score = 127 bits (140), Expect = 3e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||||||||||||||| |||||| ||||||||||||| | ||||||||||| ||||||| Sbjct 157773 GCTATTTAGCAGGTTAGAGTCTCGCTCGTTATCGGAATAAGCCAGACAAATCGCTCCACC 157714 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||| || || ||||||| || |||| |||||||| |||||||||| Sbjct 157713 AATTAAGAACGACCGTGTACCACCAACCGCCAAATCGAGAAAGAGAATTCAATCTGTC 157656 >seq2132 Length=34687 Score = 122 bits (134), Expect = 1e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||| | || ||||| | ||||||||||| || |||||||||| |||||||| Sbjct 24591 CTATTTAGCTGACTACAGTCTCAATGGTTATCGGAATAAAGCAGACAAATCGCTCCACCA 24650 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| |||||||||||||| ||| |||| |||||||||| |||||||||| Sbjct 24651 ACTAAGAGTTGCCATGCACCACCAGCCACCAAATCGAGAAAGAGCTTTCAATCTGTC 24707 >seq254 Length=186257 Score = 113 bits (124), Expect = 7e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| || Sbjct 58233 TTATCGGAATAAACCAGATAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCAACC 58174 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| ||||| |||| |||||||||| Sbjct 58173 ACTAAATCGAGAAACAGCTTTCAATCTGTC 58144 >seq134 Length=236959 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 || || ||||| || |||| | ||||| ||||||| ||||||||||||| ||||||| Sbjct 162362 CTGTTCAGCAGACTAGAGTCTTGCTCGTTGTCGGAATAAACCAGACAAATCGTTCCACCA 162303 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||| ||| |||||| ||| |||| ||| Sbjct 162302 ACTAAGAACGGCCGTGCCCCACCAACCACCAAATCGAGA 162264 >seq1021 Length=84977 Score = 89.7 bits (98), Expect = 8e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||| ||||||||||||||| ||| |||| |||||||||| | Sbjct 81723 ATCGCTCCACCAACTAAGAATGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTT 81664 Query 250 CAATCTGTC 258 ||||||||| Sbjct 81663 CAATCTGTC 81655 >seq618 Length=122541 Score = 84.2 bits (92), Expect = 3e-14 Identities = 66/79 (84%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 184 AGACAAA----TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||| || |||||||||||||||||||| ||||||||| | ||| |||| || Sbjct 93870 AGACAAAGACGTCGCTCCACCAACTAAGAACGGCTATGCACCACTAACCACCAAATCGAG 93811 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 93810 AAAGAGCTTTCAATCTGTC 93792 >seq672 Length=116764 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||| ||||| |||||||||||| | |||||||||||||||| ||| |||| |||| Sbjct 81551 CCAGAGAAATCGCTCCACCAACTAGAAGCGGCCATGCACCACCAACCACCAAATCGAGAA 81492 Query 242 AGAGCTATCAA 252 || ||| |||| Sbjct 81491 AGGGCTTTCAA 81481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796750721904