Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 214 3e-53
seq3834 210 3e-52
seq186 127 3e-27
seq2132 122 1e-25
seq254 113 7e-23
seq134 93.3 7e-17
seq1021 89.7 8e-16
seq618 84.2 3e-14
seq672 75.2 2e-11
>seq2581
Length=25017
Score = 214 bits (236), Expect = 3e-53
Identities = 198/245 (81%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||
Sbjct 429 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 487
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACC--AACCATAGT 133
| || | |||| | || | |||||||||| || |||| ||| || | ||||
Sbjct 488 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGTAGACCAGACACAGTAATC-TAGT 545
Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| |||||||||||| || |||||| ||||||||||||| |||||||||||||
Sbjct 546 CA------CTATTTAGCAGGCTATAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCG 599
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||
Sbjct 600 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAAT 659
Query 254 CTGTC 258
|||||
Sbjct 660 CTGTC 664
>seq3834
Length=8065
Score = 210 bits (232), Expect = 3e-52
Identities = 194/242 (80%), Gaps = 3/242 (1%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||
Sbjct 1462 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 1404
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | |||| | || | ||||||||||||| | | || || || |
Sbjct 1403 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTAGACTAGACACAGTAATCTA 1345
Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196
| |||||||||||| || |||||| ||||||||||||| ||||||||||||| |||
Sbjct 1344 -GTCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCTC 1286
Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||
Sbjct 1285 CACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTG 1226
Query 257 TC 258
||
Sbjct 1225 TC 1224
>seq186
Length=212611
Score = 127 bits (140), Expect = 3e-27
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||||||||||||||| |||||| ||||||||||||| | ||||||||||| |||||||
Sbjct 157773 GCTATTTAGCAGGTTAGAGTCTCGCTCGTTATCGGAATAAGCCAGACAAATCGCTCCACC 157714
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||| || || ||||||| || |||| |||||||| ||||||||||
Sbjct 157713 AATTAAGAACGACCGTGTACCACCAACCGCCAAATCGAGAAAGAGAATTCAATCTGTC 157656
>seq2132
Length=34687
Score = 122 bits (134), Expect = 1e-25
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||||||||| | || ||||| | ||||||||||| || |||||||||| ||||||||
Sbjct 24591 CTATTTAGCTGACTACAGTCTCAATGGTTATCGGAATAAAGCAGACAAATCGCTCCACCA 24650
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||| |||||||||||||| ||| |||| |||||||||| ||||||||||
Sbjct 24651 ACTAAGAGTTGCCATGCACCACCAGCCACCAAATCGAGAAAGAGCTTTCAATCTGTC 24707
>seq254
Length=186257
Score = 113 bits (124), Expect = 7e-23
Identities = 79/90 (88%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
|||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 58233 TTATCGGAATAAACCAGATAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCAACC 58174
Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||| ||||| |||| ||||||||||
Sbjct 58173 ACTAAATCGAGAAACAGCTTTCAATCTGTC 58144
>seq134
Length=236959
Score = 93.3 bits (102), Expect = 7e-17
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|| || ||||| || |||| | ||||| ||||||| ||||||||||||| |||||||
Sbjct 162362 CTGTTCAGCAGACTAGAGTCTTGCTCGTTGTCGGAATAAACCAGACAAATCGTTCCACCA 162303
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
||||||||||||| ||| |||||| ||| |||| |||
Sbjct 162302 ACTAAGAACGGCCGTGCCCCACCAACCACCAAATCGAGA 162264
>seq1021
Length=84977
Score = 89.7 bits (98), Expect = 8e-16
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249
||| |||||||||||||||| ||||||||||||||| ||| |||| |||||||||| |
Sbjct 81723 ATCGCTCCACCAACTAAGAATGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTT 81664
Query 250 CAATCTGTC 258
|||||||||
Sbjct 81663 CAATCTGTC 81655
>seq618
Length=122541
Score = 84.2 bits (92), Expect = 3e-14
Identities = 66/79 (84%), Gaps = 4/79 (5%)
Strand=Plus/Minus
Query 184 AGACAAA----TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||| || |||||||||||||||||||| ||||||||| | ||| |||| ||
Sbjct 93870 AGACAAAGACGTCGCTCCACCAACTAAGAACGGCTATGCACCACTAACCACCAAATCGAG 93811
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 93810 AAAGAGCTTTCAATCTGTC 93792
>seq672
Length=116764
Score = 75.2 bits (82), Expect = 2e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
||||| ||||| |||||||||||| | |||||||||||||||| ||| |||| ||||
Sbjct 81551 CCAGAGAAATCGCTCCACCAACTAGAAGCGGCCATGCACCACCAACCACCAAATCGAGAA 81492
Query 242 AGAGCTATCAA 252
|| ||| ||||
Sbjct 81491 AGGGCTTTCAA 81481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796750721904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |