Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq3834 360 3e-97
seq1483 360 3e-97
seq19 338 1e-90
seq2017 288 2e-75
seq3052 286 6e-75
seq1775 255 1e-65
seq1416 172 9e-41
seq486 125 1e-26
seq118 96.9 6e-18
seq588 82.4 1e-13
>seq3834
Length=8065
Score = 360 bits (398), Expect = 3e-97
Identities = 259/295 (88%), Gaps = 3/295 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || | | | |||| |||||||||||||||||||||||||
Sbjct 7192 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 7133
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 7132 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 7073
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7072 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 7013
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 7012 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 6953
Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||| || ||| | |||||||||||||||||| ||||| ||| | || ||
Sbjct 6952 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 6899
>seq1483
Length=57526
Score = 360 bits (398), Expect = 3e-97
Identities = 259/295 (88%), Gaps = 3/295 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || | | | |||| |||||||||||||||||||||||||
Sbjct 647 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 588
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 528
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 468
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 467 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 408
Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||| || ||| | |||||||||||||||||| ||||| ||| | || ||
Sbjct 407 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 354
>seq19
Length=374147
Score = 338 bits (374), Expect = 1e-90
Identities = 227/251 (90%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 38213 TCAACAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCGTA 38154
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 38153 TTAGTGGGTGCACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAACCGA 38094
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 38093 CATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 38034
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAG 269
||||||||||||||||| ||||||| || ||| || ||| | |||||||||||||
Sbjct 38033 CTGTGGTAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATAG 37975
Query 270 GCCACACTTTC 280
||||| |||||
Sbjct 37974 GCCACGCTTTC 37964
>seq2017
Length=37916
Score = 288 bits (318), Expect = 2e-75
Identities = 215/251 (86%), Gaps = 1/251 (0%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||
Sbjct 22241 GTCAACAGTAGGGTAAAACTAACCTGTCTCGTGATGGTCTAAACCCAGCTCACGTTTCCT 22182
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| | ||||||||| | | |||||| | ||||||
Sbjct 22181 ATTAGTGGGTGAACAATCCAACGCTTGC-GAATTCTGCATTGCATTGATAGCACGAGCCG 22123
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
| ||| |||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 22122 ATATCAAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTACCACAAGCTAGTTATC 22063
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
||||||||||||||||| |||| || || ||| | | || |||| ||| ||||
Sbjct 22062 ACTGTGGTAACTTTTCTGACACCACTTACCAGAAACTCCCTGGATTAAAAGCATCCATAG 22003
Query 270 GCCACACTTTC 280
||||| |||||
Sbjct 22002 GCCACGCTTTC 21992
>seq3052
Length=16588
Score = 286 bits (316), Expect = 6e-75
Identities = 221/259 (85%), Gaps = 8/259 (3%)
Strand=Plus/Minus
Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95
|| ||||||||| |||||||||||||||||||||||||| |||||||| ||| || ||||
Sbjct 16086 AGCAGGGTAAAATTAACCTGTCTCATGACGGTCTAAACCAAGCTCACGCTCCATAGTAGT 16027
Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155
||||||||||||||||| || |||||||||||||| ||||||||| ||||||||
Sbjct 16026 GGGTGAACAATCCAACGGTTGGCGAATTCTGCTTCGCAATGATAGGA-----CGACATCG 15972
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 15971 AAGGAT-AAAAAGCAACGTCGCTATGGATGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 15913
Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGCCAC 274
|||||||||||| ||||||| || ||| || ||| | ||| ||||||||||||||
Sbjct 15912 GTAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAAGATCGATAGGCCAC 15854
Query 275 ACTTTCATGGTTTGTATTC 293
||||| || |||| ||
Sbjct 15853 GCTTTCGCAGTCTGTAGTC 15835
>seq1775
Length=46317
Score = 255 bits (282), Expect = 1e-65
Identities = 199/236 (84%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | || ||||| | || || || | ||||||| |||||||||||| ||||
Sbjct 21608 TACTAAGCAGGATAACCATCGCAGCAACATGTTAACAGTAGGATAAAACTAACCTATCTC 21667
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 21668 ACGACGATCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGCC 21727
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| |||||||||| | ||||||||||||||| |||||||||| ||||
Sbjct 21728 AATTCTGCTTCGCATGGATAGGAAGATCTGACATCGAAGGATCAGAAAGCAACGTTGCTA 21787
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235
|| | ||||||||| |||| ||| || ||| ||| |||||||||||| |||||||
Sbjct 21788 TGGAGGCTTGGCTGTCACACACCAATTGTCCTTGTCGTAACTTTTCTGACACCTCT 21843
>seq1416
Length=60968
Score = 172 bits (190), Expect = 9e-41
Identities = 196/257 (76%), Gaps = 6/257 (2%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| ||| ||| |||||||||| ||| ||| | ||||||||||||||| |||| | ||
Sbjct 20680 GTCAACAGGAGGATAAAACTAACTTGTTTCACAAGGGTCTAAACCCAGCTTACGTACGCT 20739
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||||||||||| ||||||||||||| | | ||| || | ||| | || ||
Sbjct 20740 ATTAGTGGGTGAATAATCCAACGCTTATC-AGGCCTGTTTTGCAGCAATA-AACGAACCA 20797
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||| | |||||||||| |||| |||||| ||| | ||| | | || |
Sbjct 20798 ACATCGAAGGATCAGAGAGCAACGTCGGTATGGACGCTTAGCTACTACAGGATAAATACC 20857
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTA-AAGGATCGAT 267
| ||||| |||||||||| ||||||| || ||| || ||||| ||||||||||
Sbjct 20858 CTTGTGGCAACTTTTCTGACACCTCTTACCGGAAACCATC--TTGACTAGAAGGATCGAT 20915
Query 268 AGGCCACACTTTCATGG 284
| ||||| ||||| ||
Sbjct 20916 AAGCCACGTTTTCAAGG 20932
>seq486
Length=139231
Score = 125 bits (138), Expect = 1e-26
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
|||||||| ||||||| |||||||| || |||| |||||| | |||| || | ||
Sbjct 103151 GTCTAAACTCAGCTCATGTTCCCTAATAATGGGAGAACAACCTAACGAATAGCAAAAAAA 103210
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
|| | || ||||||| ||||||||||||||||||| | |||||||||||| |||
Sbjct 103211 AATTTCATTGGAAAGGAAGAACCGACATCGAAGGATCAAAGGGAAACGTCGCTATGGACG 103270
Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
|||||||| || || | || ||| |||||| || ||||| ||
Sbjct 103271 CTTGGCTGTCATAAACTAGGTATTCCTGTGATAGCTTTTTTG 103312
>seq118
Length=245988
Score = 96.9 bits (106), Expect = 6e-18
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| |||| | ||| |||| ||| |||||| ||||||||||| | ||||||||||||||
Sbjct 151823 GTCAACAGTCGAGTAGAACTGACCGGTCTCACGACGGTCTAAATCAAGCTCACGTTCCCT 151764
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122
|||| |||||| ||| ||||| || | |||||
Sbjct 151763 ATTATTGGGTGGACATTCCAATGCATGGCGAAT 151731
>seq588
Length=125543
Score = 82.4 bits (90), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
|||||||||||||||| || | ||| | | ||||||| ||||||||| ||||| |||||
Sbjct 14691 AAAAAGCAACGTCGCTGTGGATACTTCGTTTCCACAAGACAGTTATCCATGTGGAAACTT 14750
Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACT-AAAGGATCGATAGGCCAC 274
||||| || || | || ||| ||| ||| | |||| |||||||||||||
Sbjct 14751 TTCTGACATCTTTTACCAAAAA---CGATCTGGATTAAAAGCATCGATAGGCCAC 14802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854345455104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |