Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3834 360 3e-97 seq1483 360 3e-97 seq19 338 1e-90 seq2017 288 2e-75 seq3052 286 6e-75 seq1775 255 1e-65 seq1416 172 9e-41 seq486 125 1e-26 seq118 96.9 6e-18 seq588 82.4 1e-13 >seq3834 Length=8065 Score = 360 bits (398), Expect = 3e-97 Identities = 259/295 (88%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 7192 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 7133 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 7132 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 7073 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7072 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 7013 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 7012 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 6953 Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || ||| | |||||||||||||||||| ||||| ||| | || || Sbjct 6952 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 6899 >seq1483 Length=57526 Score = 360 bits (398), Expect = 3e-97 Identities = 259/295 (88%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 647 TACTAAGCAGGATTACTATCGCAACAATATGTCAACAGTAGGGTAAAACTAACCTGTCTC 588 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 587 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 528 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 468 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 467 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 408 Query 240 TCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || ||| | |||||||||||||||||| ||||| ||| | || || Sbjct 407 AGAAA-CTCTCTGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTATACTC 354 >seq19 Length=374147 Score = 338 bits (374), Expect = 1e-90 Identities = 227/251 (90%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 38213 TCAACAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCGTA 38154 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||| Sbjct 38153 TTAGTGGGTGCACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAACCGA 38094 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 38093 CATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 38034 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAG 269 ||||||||||||||||| ||||||| || ||| || ||| | ||||||||||||| Sbjct 38033 CTGTGGTAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAGGATCGATAG 37975 Query 270 GCCACACTTTC 280 ||||| ||||| Sbjct 37974 GCCACGCTTTC 37964 >seq2017 Length=37916 Score = 288 bits (318), Expect = 2e-75 Identities = 215/251 (86%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| Sbjct 22241 GTCAACAGTAGGGTAAAACTAACCTGTCTCGTGATGGTCTAAACCCAGCTCACGTTTCCT 22182 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| | ||||||||| | | |||||| | |||||| Sbjct 22181 ATTAGTGGGTGAACAATCCAACGCTTGC-GAATTCTGCATTGCATTGATAGCACGAGCCG 22123 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 | ||| |||||||||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 22122 ATATCAAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTACCACAAGCTAGTTATC 22063 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||||||||||| |||| || || ||| | | || |||| ||| |||| Sbjct 22062 ACTGTGGTAACTTTTCTGACACCACTTACCAGAAACTCCCTGGATTAAAAGCATCCATAG 22003 Query 270 GCCACACTTTC 280 ||||| ||||| Sbjct 22002 GCCACGCTTTC 21992 >seq3052 Length=16588 Score = 286 bits (316), Expect = 6e-75 Identities = 221/259 (85%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 || ||||||||| |||||||||||||||||||||||||| |||||||| ||| || |||| Sbjct 16086 AGCAGGGTAAAATTAACCTGTCTCATGACGGTCTAAACCAAGCTCACGCTCCATAGTAGT 16027 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||||||||||| || |||||||||||||| ||||||||| |||||||| Sbjct 16026 GGGTGAACAATCCAACGGTTGGCGAATTCTGCTTCGCAATGATAGGA-----CGACATCG 15972 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 15971 AAGGAT-AAAAAGCAACGTCGCTATGGATGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 15913 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGCCAC 274 |||||||||||| ||||||| || ||| || ||| | ||| |||||||||||||| Sbjct 15912 GTAACTTTTCTGACACCTCTTACCAGAAA-CTCTCTGGATTAAAAAGATCGATAGGCCAC 15854 Query 275 ACTTTCATGGTTTGTATTC 293 ||||| || |||| || Sbjct 15853 GCTTTCGCAGTCTGTAGTC 15835 >seq1775 Length=46317 Score = 255 bits (282), Expect = 1e-65 Identities = 199/236 (84%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | || ||||| | || || || | ||||||| |||||||||||| |||| Sbjct 21608 TACTAAGCAGGATAACCATCGCAGCAACATGTTAACAGTAGGATAAAACTAACCTATCTC 21667 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 21668 ACGACGATCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGCC 21727 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||| | ||||||||||||||| |||||||||| |||| Sbjct 21728 AATTCTGCTTCGCATGGATAGGAAGATCTGACATCGAAGGATCAGAAAGCAACGTTGCTA 21787 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 || | ||||||||| |||| ||| || ||| ||| |||||||||||| ||||||| Sbjct 21788 TGGAGGCTTGGCTGTCACACACCAATTGTCCTTGTCGTAACTTTTCTGACACCTCT 21843 >seq1416 Length=60968 Score = 172 bits (190), Expect = 9e-41 Identities = 196/257 (76%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||| ||| |||||||||| ||| ||| | ||||||||||||||| |||| | || Sbjct 20680 GTCAACAGGAGGATAAAACTAACTTGTTTCACAAGGGTCTAAACCCAGCTTACGTACGCT 20739 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||| ||||||||||||| | | ||| || | ||| | || || Sbjct 20740 ATTAGTGGGTGAATAATCCAACGCTTATC-AGGCCTGTTTTGCAGCAATA-AACGAACCA 20797 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||| | |||||||||| |||| |||||| ||| | ||| | | || | Sbjct 20798 ACATCGAAGGATCAGAGAGCAACGTCGGTATGGACGCTTAGCTACTACAGGATAAATACC 20857 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTA-AAGGATCGAT 267 | ||||| |||||||||| ||||||| || ||| || ||||| |||||||||| Sbjct 20858 CTTGTGGCAACTTTTCTGACACCTCTTACCGGAAACCATC--TTGACTAGAAGGATCGAT 20915 Query 268 AGGCCACACTTTCATGG 284 | ||||| ||||| || Sbjct 20916 AAGCCACGTTTTCAAGG 20932 >seq486 Length=139231 Score = 125 bits (138), Expect = 1e-26 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||| ||||||| |||||||| || |||| |||||| | |||| || | || Sbjct 103151 GTCTAAACTCAGCTCATGTTCCCTAATAATGGGAGAACAACCTAACGAATAGCAAAAAAA 103210 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 || | || ||||||| ||||||||||||||||||| | |||||||||||| ||| Sbjct 103211 AATTTCATTGGAAAGGAAGAACCGACATCGAAGGATCAAAGGGAAACGTCGCTATGGACG 103270 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||| || || | || ||| |||||| || ||||| || Sbjct 103271 CTTGGCTGTCATAAACTAGGTATTCCTGTGATAGCTTTTTTG 103312 >seq118 Length=245988 Score = 96.9 bits (106), Expect = 6e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||| | ||| |||| ||| |||||| ||||||||||| | |||||||||||||| Sbjct 151823 GTCAACAGTCGAGTAGAACTGACCGGTCTCACGACGGTCTAAATCAAGCTCACGTTCCCT 151764 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 |||| |||||| ||| ||||| || | ||||| Sbjct 151763 ATTATTGGGTGGACATTCCAATGCATGGCGAAT 151731 >seq588 Length=125543 Score = 82.4 bits (90), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||||||||||||| || | ||| | | ||||||| ||||||||| ||||| ||||| Sbjct 14691 AAAAAGCAACGTCGCTGTGGATACTTCGTTTCCACAAGACAGTTATCCATGTGGAAACTT 14750 Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGA--GGGACT-AAAGGATCGATAGGCCAC 274 ||||| || || | || ||| ||| ||| | |||| ||||||||||||| Sbjct 14751 TTCTGACATCTTTTACCAAAAA---CGATCTGGATTAAAAGCATCGATAGGCCAC 14802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854345455104