Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq3834 190 4e-46
seq2581 156 8e-36
>seq3834
Length=8065
Score = 190 bits (210), Expect = 4e-46
Identities = 200/258 (78%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | ||| | ||||| || | ||||| | ||||||||||||||
Sbjct 1366 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 1423
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||||||| || ||| |||| | |||
Sbjct 1424 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAACTGGCCTATC- 1482
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
| | |||| ||||| | ||||| | | ||||||| |||| ||||||| | ||||
Sbjct 1483 -CATTGCCGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTG 1541
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||| | ||| |||||||||| ||||||||| | | ||||||||| | || |||||
Sbjct 1542 TAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATT 1601
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||| ||||||
Sbjct 1602 ACGTCCCTGCCATTTGTA 1619
>seq2581
Length=25017
Score = 156 bits (172), Expect = 8e-36
Identities = 225/312 (72%), Gaps = 13/312 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAG--GCCCGCTTTGGCGGGTCGCCGGCTTCTT 77
||||||||| || |||||||||||| | | || || | |||| | |||
Sbjct 573 GAGCGAGACTATAGCCTGCTAAATAGTGACTAGATTACTGTGTCTGGTC------TACTT 520
Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136
||||||| | ||| | ||||| || | ||||| | ||||||||||||||||||||
Sbjct 519 AGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCC 462
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
|||||||| | |||| |||||||||||||| || ||| |||| | | | || | |
Sbjct 461 TTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAACTGG--CCTATCCATTG 404
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| ||||| | ||||| | | ||||||| ||| ||||||| | |||| |||||
Sbjct 403 CCGAAAGGTATTGGTAAACCGTTGAAACTCTTCTGTGACCGGGATAGGGAATTGTAATTA 344
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
|| ||| ||||| |||| |||| |||| | | ||||||||| | | |||||| |||
Sbjct 343 TTTTCCTTGAACGAAGAATTCCTACTAAGTGTGAGTCATCAGCTCACACTGATTATATCC 284
Query 317 CTGCCCTTTGTA 328
||||| ||||||
Sbjct 283 CTGCCATTTGTA 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947139530752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |