Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3834 190 4e-46 seq2581 156 8e-36 >seq3834 Length=8065 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 1366 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 1423 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||| || ||| |||| | ||| Sbjct 1424 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAACTGGCCTATC- 1482 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | |||| ||||| | ||||| | | ||||||| |||| ||||||| | |||| Sbjct 1483 -CATTGCCGAAAGGTATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTG 1541 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | ||| |||||||||| ||||||||| | | ||||||||| | || ||||| Sbjct 1542 TAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATT 1601 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||||||| |||||| Sbjct 1602 ACGTCCCTGCCATTTGTA 1619 >seq2581 Length=25017 Score = 156 bits (172), Expect = 8e-36 Identities = 225/312 (72%), Gaps = 13/312 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAG--GCCCGCTTTGGCGGGTCGCCGGCTTCTT 77 ||||||||| || |||||||||||| | | || || | |||| | ||| Sbjct 573 GAGCGAGACTATAGCCTGCTAAATAGTGACTAGATTACTGTGTCTGGTC------TACTT 520 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||| | ||| | ||||| || | ||||| | |||||||||||||||||||| Sbjct 519 AGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCC 462 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||| | |||| |||||||||||||| || ||| |||| | | | || | | Sbjct 461 TTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAACTGG--CCTATCCATTG 404 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||||| | ||||| | | ||||||| ||| ||||||| | |||| ||||| Sbjct 403 CCGAAAGGTATTGGTAAACCGTTGAAACTCTTCTGTGACCGGGATAGGGAATTGTAATTA 344 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || ||| ||||| |||| |||| |||| | | ||||||||| | | |||||| ||| Sbjct 343 TTTTCCTTGAACGAAGAATTCCTACTAAGTGTGAGTCATCAGCTCACACTGATTATATCC 284 Query 317 CTGCCCTTTGTA 328 ||||| |||||| Sbjct 283 CTGCCATTTGTA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947139530752