Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq3834 475 1e-131
seq3052 297 6e-78
seq2581 185 3e-44
seq1483 159 1e-36
seq2154 125 2e-26
seq10 118 3e-24
seq907 82.4 2e-13
>seq3834
Length=8065
Score = 475 bits (526), Expect = 1e-131
Identities = 431/535 (81%), Gaps = 21/535 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| |||||||||||||||||||
Sbjct 6865 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 6806
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||||||| ||||||||| |||||||||| |||||||||||| || | | ||
Sbjct 6805 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 6746
Query 127 GGC---CCGCGAAG-GAC----CTTAACGCCAGAAAATGGTCGGTGA--AGAC-CAGTTC 175
| || | | | ||| |||||| | | |||| || | | || || |||
Sbjct 6745 GTAATGCCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCATAAAACTCAATTC 6686
Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228
| |||| || |||||||| || |||| | || ||||||||||| | ||
Sbjct 6685 TCTTTTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATGC 6626
Query 229 -CGAA-ACGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285
|||| ||| ||||||| ||| |||||||||||| | ||||||| ||| ||||||
Sbjct 6625 ACGAACACGATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGA 6566
Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 6565 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGT 6506
Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 6505 GGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 6446
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6445 GTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 6386
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||||||||| | ||||| || | ||| ||||||||||||||||||||||||||
Sbjct 6385 CCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 6331
>seq3052
Length=16588
Score = 297 bits (328), Expect = 6e-78
Identities = 237/284 (83%), Gaps = 1/284 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||| || ||| |||||| ||||| | ||||||| | |||||||||||||||||
Sbjct 15156 CTCCTACCTATGCTACACTTCTCATGATTCTTCACAATACCAAACTAGAGTCAAGCTCAA 15097
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||| |||||||||||| | ||| ||||| | ||||| | ||||||||||||||||||
Sbjct 15096 CAGGATCTTCTTTCCCCACC-ATTTTGCCAATCTCGTTCTCATGGCTGTGGTTTCGCTAG 15038
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |||| ||
Sbjct 15037 ATAGTAGTTAGGGTCAGTGAGAATCTCGTTAATCCATTCATGCTCGTCAGTAGTTAGCTG 14978
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| |||||||| || ||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 14977 ATGAGGCATTCGGTTACCTTAAGGGAGTCATAGTTACTTTCGCCGTTTACCAACGCTTAC 14918
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
| ||||| || | ||| ||||||||||||||||||||||||||
Sbjct 14917 TCGAATTGCTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 14874
Score = 102 bits (112), Expect = 3e-19
Identities = 91/113 (81%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||| | ||| ||| || ||| ||| ||||||||||||||| ||| |
Sbjct 15801 CTTTTGCTCTGCGAGAGGTTTTCGTCCTCTCCGAGCTAACCTTAGGACACCTGCCTTACG 15742
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119
|||| ||||||||||| |||||| |||||| ||| ||||||||||||||| ||
Sbjct 15741 GTTTGACAGATGTGCCTCCCCAGTCAAACT-CCCGCCTGACAATGTCATCGAC 15690
>seq2581
Length=25017
Score = 185 bits (204), Expect = 3e-44
Identities = 243/332 (73%), Gaps = 26/332 (8%)
Strand=Plus/Plus
Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG----G 128
|| |||| ||||||||| |||||| ||| |||||||||||| || | | ||| |
Sbjct 728 CACATGTACCGCCCCAGTCAAACTTCCCGCCTGACAATGTCTTCGGCGAGAGTCGTAATG 787
Query 129 CCCGCGAAGGAC----CTTAACGCCA----GAAAATGGTCGGTGAAGACCAGTTC-CGCT 179
|| | | ||| |||||| | | | ||| ||| | || || ||| | |
Sbjct 788 CCATCATATGACTTTACTTAACACAAATAAGTAAAGAGTCA-TAAAACTCAATTCTCTTT 846
Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT--------TGCGCCGA 231
||| || |||||||| || |||||| || ||||||||||| | ||||| |
Sbjct 847 TCACCGAATAAGTAAAGAATCGATAAAAGTTGTGGTATTTCATTGACGATCATGCGCGAA 906
Query 232 AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291
||| | || ||| |||||||||||| | ||||||| ||| ||||||||||||
Sbjct 907 CACGATTTCC---TATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAG 963
Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351
|||||| |||||||||||||||||| || || ||||||||||||||||| |||||||
Sbjct 964 CTCAAC-GGGTCTTCTTTCCCCGCTATTTTTGCGCAGCCCGTTCCCTTGGCTATGGTTTC 1022
Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTC 383
|||||||||||| ||||||| |||||||||||
Sbjct 1023 GCTAGATAGTAGTTAGGGACGGTGGGAATCTC 1054
>seq1483
Length=57526
Score = 159 bits (176), Expect = 1e-36
Identities = 230/320 (72%), Gaps = 21/320 (7%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| |||||||||||||||||||
Sbjct 320 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 261
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||||||| ||||||||| |||||||||| |||||||||||| || | | ||
Sbjct 260 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 201
Query 127 G----GCCCGCGAAGGAC----CTTAACGCCAGAAAATGGTCGGT--GAAGAC-CAGTTC 175
| ||| | ||| |||||| | | |||| || || || || |||
Sbjct 200 GTAATGCCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCATAAAACTCAATTC 141
Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCA--------CTTGC 226
| |||| || |||||||| || |||| | || ||||||||||| | |||
Sbjct 140 TCTTTTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATGC 81
Query 227 GCCGAAACG-GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285
| | ||| ||||||| ||| |||||||||||| | ||||||| ||| ||||||
Sbjct 80 ACGAACACGATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGA 21
Query 286 GTCAAGCTCAACAGGGTCTT 305
||||||||||||||||||||
Sbjct 20 GTCAAGCTCAACAGGGTCTT 1
>seq2154
Length=34149
Score = 125 bits (138), Expect = 2e-26
Identities = 90/101 (89%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339
|||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||||
Sbjct 24674 ACTAGAGTCAAGGTCAATAGGGTCTTCTTTCCC-GCTATTTTTGCCAAGCCCGTTCCCTT 24732
Query 340 GGCTGTGGTTTCGCTAGATAGTA-GATAGGGACAGTGGGAA 379
| ||||||||||||||||||||| | || ||||||||||||
Sbjct 24733 GCCTGTGGTTTCGCTAGATAGTATGGTATGGACAGTGGGAA 24773
>seq10
Length=429617
Score = 118 bits (130), Expect = 3e-24
Identities = 97/115 (84%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 249 CTACACCTCTCAAGTCATT--TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
|||||||| ||| ||||| |||||| ||| |||| ||||||||||||||||||||||
Sbjct 88184 CTACACCTTTCA--TCATTCTTCACAATGTCAAACTAAAGTCAAGCTCAACAGGGTCTTC 88127
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|| || ||| || ||||||||||||| ||||| |||||||||||||||||||
Sbjct 88126 TT-CCATGCTATTTTTGCCAAGCCCGTTCTCTTGGTTGTGGTTTCGCTAGATAGT 88073
>seq907
Length=94020
Score = 82.4 bits (90), Expect = 2e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308
|||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 62332 CTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTT 62391
Query 309 TCCCC 313
|||||
Sbjct 62392 TCCCC 62396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635095608832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |