Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3834 475 1e-131 seq3052 297 6e-78 seq2581 185 3e-44 seq1483 159 1e-36 seq2154 125 2e-26 seq10 118 3e-24 seq907 82.4 2e-13 >seq3834 Length=8065 Score = 475 bits (526), Expect = 1e-131 Identities = 431/535 (81%), Gaps = 21/535 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 6865 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 6806 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| |||||||||||| || | | || Sbjct 6805 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 6746 Query 127 GGC---CCGCGAAG-GAC----CTTAACGCCAGAAAATGGTCGGTGA--AGAC-CAGTTC 175 | || | | | ||| |||||| | | |||| || | | || || ||| Sbjct 6745 GTAATGCCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCATAAAACTCAATTC 6686 Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 | |||| || |||||||| || |||| | || ||||||||||| | || Sbjct 6685 TCTTTTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATGC 6626 Query 229 -CGAA-ACGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 |||| ||| ||||||| ||| |||||||||||| | ||||||| ||| |||||| Sbjct 6625 ACGAACACGATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGA 6566 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 6565 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGT 6506 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 6505 GGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 6446 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6445 GTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 6386 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||| | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 6385 CCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 6331 >seq3052 Length=16588 Score = 297 bits (328), Expect = 6e-78 Identities = 237/284 (83%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| || ||| |||||| ||||| | ||||||| | ||||||||||||||||| Sbjct 15156 CTCCTACCTATGCTACACTTCTCATGATTCTTCACAATACCAAACTAGAGTCAAGCTCAA 15097 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||||| | ||| ||||| | ||||| | |||||||||||||||||| Sbjct 15096 CAGGATCTTCTTTCCCCACC-ATTTTGCCAATCTCGTTCTCATGGCTGTGGTTTCGCTAG 15038 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |||| || Sbjct 15037 ATAGTAGTTAGGGTCAGTGAGAATCTCGTTAATCCATTCATGCTCGTCAGTAGTTAGCTG 14978 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | |||||||| || ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 14977 ATGAGGCATTCGGTTACCTTAAGGGAGTCATAGTTACTTTCGCCGTTTACCAACGCTTAC 14918 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 14917 TCGAATTGCTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 14874 Score = 102 bits (112), Expect = 3e-19 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||| | ||| ||| || ||| ||| ||||||||||||||| ||| | Sbjct 15801 CTTTTGCTCTGCGAGAGGTTTTCGTCCTCTCCGAGCTAACCTTAGGACACCTGCCTTACG 15742 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 |||| ||||||||||| |||||| |||||| ||| ||||||||||||||| || Sbjct 15741 GTTTGACAGATGTGCCTCCCCAGTCAAACT-CCCGCCTGACAATGTCATCGAC 15690 >seq2581 Length=25017 Score = 185 bits (204), Expect = 3e-44 Identities = 243/332 (73%), Gaps = 26/332 (8%) Strand=Plus/Plus Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG----G 128 || |||| ||||||||| |||||| ||| |||||||||||| || | | ||| | Sbjct 728 CACATGTACCGCCCCAGTCAAACTTCCCGCCTGACAATGTCTTCGGCGAGAGTCGTAATG 787 Query 129 CCCGCGAAGGAC----CTTAACGCCA----GAAAATGGTCGGTGAAGACCAGTTC-CGCT 179 || | | ||| |||||| | | | ||| ||| | || || ||| | | Sbjct 788 CCATCATATGACTTTACTTAACACAAATAAGTAAAGAGTCA-TAAAACTCAATTCTCTTT 846 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT--------TGCGCCGA 231 ||| || |||||||| || |||||| || ||||||||||| | ||||| | Sbjct 847 TCACCGAATAAGTAAAGAATCGATAAAAGTTGTGGTATTTCATTGACGATCATGCGCGAA 906 Query 232 AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 ||| | || ||| |||||||||||| | ||||||| ||| |||||||||||| Sbjct 907 CACGATTTCC---TATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAG 963 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||| |||||||||||||||||| || || ||||||||||||||||| ||||||| Sbjct 964 CTCAAC-GGGTCTTCTTTCCCCGCTATTTTTGCGCAGCCCGTTCCCTTGGCTATGGTTTC 1022 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||||||||| ||||||| ||||||||||| Sbjct 1023 GCTAGATAGTAGTTAGGGACGGTGGGAATCTC 1054 >seq1483 Length=57526 Score = 159 bits (176), Expect = 1e-36 Identities = 230/320 (72%), Gaps = 21/320 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 320 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 261 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| |||||||||||| || | | || Sbjct 260 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCTTCGGCGAGAGTC 201 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCAGAAAATGGTCGGT--GAAGAC-CAGTTC 175 | ||| | ||| |||||| | | |||| || || || || ||| Sbjct 200 GTAATGCCACCATGTGACTTTACTTAACACAAATAAATAAAGAGTCATAAAACTCAATTC 141 Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCA--------CTTGC 226 | |||| || |||||||| || |||| | || ||||||||||| | ||| Sbjct 140 TCTTTTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGATCATGC 81 Query 227 GCCGAAACG-GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | ||| ||||||| ||| |||||||||||| | ||||||| ||| |||||| Sbjct 80 ACGAACACGATCTCCCACCTATGCTACACCTCTCATGATTCTTCACAATGTCAAACTAGA 21 Query 286 GTCAAGCTCAACAGGGTCTT 305 |||||||||||||||||||| Sbjct 20 GTCAAGCTCAACAGGGTCTT 1 >seq2154 Length=34149 Score = 125 bits (138), Expect = 2e-26 Identities = 90/101 (89%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 |||||||||||| |||| ||||||||||||||| ||| || ||||||||||||||||| Sbjct 24674 ACTAGAGTCAAGGTCAATAGGGTCTTCTTTCCC-GCTATTTTTGCCAAGCCCGTTCCCTT 24732 Query 340 GGCTGTGGTTTCGCTAGATAGTA-GATAGGGACAGTGGGAA 379 | ||||||||||||||||||||| | || |||||||||||| Sbjct 24733 GCCTGTGGTTTCGCTAGATAGTATGGTATGGACAGTGGGAA 24773 >seq10 Length=429617 Score = 118 bits (130), Expect = 3e-24 Identities = 97/115 (84%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 249 CTACACCTCTCAAGTCATT--TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 |||||||| ||| ||||| |||||| ||| |||| |||||||||||||||||||||| Sbjct 88184 CTACACCTTTCA--TCATTCTTCACAATGTCAAACTAAAGTCAAGCTCAACAGGGTCTTC 88127 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 || || ||| || ||||||||||||| ||||| ||||||||||||||||||| Sbjct 88126 TT-CCATGCTATTTTTGCCAAGCCCGTTCTCTTGGTTGTGGTTTCGCTAGATAGT 88073 >seq907 Length=94020 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||| Sbjct 62332 CTACACCTCTCATGATTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTT 62391 Query 309 TCCCC 313 ||||| Sbjct 62392 TCCCC 62396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635095608832