Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3834 235 2e-59
seq202 161 3e-37
seq293 143 8e-32
seq1465 87.8 5e-15
seq184 86.0 2e-14
seq306 82.4 2e-13
>seq3834
Length=8065
Score = 235 bits (260), Expect = 2e-59
Identities = 329/452 (73%), Gaps = 21/452 (5%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 485 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 426
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||
Sbjct 425 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 366
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| |||||||||| | | || |||||||| | |||||||||||||| | ||
Sbjct 365 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 308
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281
| | |||| | | |||| | |||| | | |||||| || ||| | ||
Sbjct 307 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 251
Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340
| ||||| ||| ||| |||||||| | ||||| ||| ||||| ||||||
Sbjct 250 ACATCCGAAAATGATTG--ATTTGCTCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTA 193
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
|||||||||||||| ||||||||| | |||||||| ||| | | ||||
Sbjct 192 ACCGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 138
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
|| || | ||| | ||||||||| |||||||||||||| | ||| | || |
Sbjct 137 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCACTTGA-----AGCTGA-AC-TCCT 85
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492
||||||||||||||||||| | |||||||
Sbjct 84 CATGCATGGCTTAATCTTTTAACTGAGCATAT 53
>seq202
Length=203391
Score = 161 bits (178), Expect = 3e-37
Identities = 218/297 (73%), Gaps = 9/297 (3%)
Strand=Plus/Plus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|||||| | | || || |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 167717 GATTGGATGAGTTTCGAGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCC 167776
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
||||||||| ||||||||| |||| ||||||||||| ||| |||||| | | || |
Sbjct 167777 CTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAATAACCGTGGTAGACTAATAGAC 167836
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251
|||||| | |||||||||||||| | || | | |||| | | |||| | |
Sbjct 167837 TACCAT--TAGGTTGATAGGGCAGACACTTTTTCGGATTATCGGC-GAACAAG--CCGCC 167891
Query 252 GATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTA 310
||| | |||||| || ||| || | | ||||| ||| ||| ||||
Sbjct 167892 GATATACTGCGTTATTCAGAGTCAGCAGACTAAAACCGAAAATGATTG--ATTTGCTCTA 167949
Query 311 ATAAATACACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTAC 366
|||| | ||||| ||| ||||| |||||| |||||||| ||||||| |||| |||
Sbjct 167950 ATAATTGCACCCTTTCGAAAGTCAGGGTTTAATAGCATGTGTTAGCTCCAGAAATAC 168006
>seq293
Length=176927
Score = 143 bits (158), Expect = 8e-32
Identities = 115/138 (83%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 90904 TAAGTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCG 90845
Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198
|| ||||| || || | |||||||||| |||||||||| | | | ||||||||
Sbjct 90844 GAGTCGAATTCTCATCCTCCGTTACCCGCAATAACCATGGTAGACTAACAGACTACCATC 90785
Query 199 GAAAGTTGATAGGGCAGA 216
| ||||||||||||||
Sbjct 90784 --AGGTTGATAGGGCAGA 90769
>seq1465
Length=58654
Score = 87.8 bits (96), Expect = 5e-15
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138
||| || ||| ||||||||| |||||||||||| ||| |||||| |||||| |||||||
Sbjct 17168 TAAGTTTCGCATCTGCTGCCTACCTTGGATGTGGAAGC-GTTTCTAAGGCTCTCTCTCCG 17226
Query 139 GAATCGAACCCTAAT 153
|||||||||||| ||
Sbjct 17227 GAATCGAACCCTTAT 17241
>seq184
Length=212989
Score = 86.0 bits (94), Expect = 2e-14
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
|| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 34299 TTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTC 34248
>seq306
Length=173321
Score = 82.4 bits (90), Expect = 2e-13
Identities = 79/102 (77%), Gaps = 6/102 (6%)
Strand=Plus/Plus
Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT 108
||||||||| || | || |||||| ||| || |||||||||||||| ||
Sbjct 17913 TTGTCACTATTTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTGCC------ 17966
Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150
||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 17967 GTGGTAGCCGTTTCTAAGGCCCCCTCTCCGGAGTCCAACCCT 18008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510303576064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |