Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3834 235 2e-59 seq202 161 3e-37 seq293 143 8e-32 seq1465 87.8 5e-15 seq184 86.0 2e-14 seq306 82.4 2e-13 >seq3834 Length=8065 Score = 235 bits (260), Expect = 2e-59 Identities = 329/452 (73%), Gaps = 21/452 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 485 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 426 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 425 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 366 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 365 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 308 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGG 281 | | |||| | | |||| | |||| | | |||||| || ||| | || Sbjct 307 TTCGGATTATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 251 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 | ||||| ||| ||| |||||||| | ||||| ||| ||||| |||||| Sbjct 250 ACATCCGAAAATGATTG--ATTTGCTCTAATAATTGCACCCTTTCGAAAGTCAGGGTTTA 193 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 |||||||||||||| ||||||||| | |||||||| ||| | | |||| Sbjct 192 ACCGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----ATAGGATTTTCCGAATA 138 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || || | ||| | ||||||||| |||||||||||||| | ||| | || | Sbjct 137 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCACTTGA-----AGCTGA-AC-TCCT 85 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||||||||||||||||||| | ||||||| Sbjct 84 CATGCATGGCTTAATCTTTTAACTGAGCATAT 53 >seq202 Length=203391 Score = 161 bits (178), Expect = 3e-37 Identities = 218/297 (73%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 |||||| | | || || |||||||| |||||||||||||||||||||||||| ||||||| Sbjct 167717 GATTGGATGAGTTTCGAGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCC 167776 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||||| ||||||||| |||| ||||||||||| ||| |||||| | | || | Sbjct 167777 CTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAATAACCGTGGTAGACTAATAGAC 167836 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 |||||| | |||||||||||||| | || | | |||| | | |||| | | Sbjct 167837 TACCAT--TAGGTTGATAGGGCAGACACTTTTTCGGATTATCGGC-GAACAAG--CCGCC 167891 Query 252 GATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTA 310 ||| | |||||| || ||| || | | ||||| ||| ||| |||| Sbjct 167892 GATATACTGCGTTATTCAGAGTCAGCAGACTAAAACCGAAAATGATTG--ATTTGCTCTA 167949 Query 311 ATAAATACACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTAC 366 |||| | ||||| ||| ||||| |||||| |||||||| ||||||| |||| ||| Sbjct 167950 ATAATTGCACCCTTTCGAAAGTCAGGGTTTAATAGCATGTGTTAGCTCCAGAAATAC 168006 >seq293 Length=176927 Score = 143 bits (158), Expect = 8e-32 Identities = 115/138 (83%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 90904 TAAGTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCG 90845 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 || ||||| || || | |||||||||| |||||||||| | | | |||||||| Sbjct 90844 GAGTCGAATTCTCATCCTCCGTTACCCGCAATAACCATGGTAGACTAACAGACTACCATC 90785 Query 199 GAAAGTTGATAGGGCAGA 216 | |||||||||||||| Sbjct 90784 --AGGTTGATAGGGCAGA 90769 >seq1465 Length=58654 Score = 87.8 bits (96), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || ||| ||||||||| |||||||||||| ||| |||||| |||||| ||||||| Sbjct 17168 TAAGTTTCGCATCTGCTGCCTACCTTGGATGTGGAAGC-GTTTCTAAGGCTCTCTCTCCG 17226 Query 139 GAATCGAACCCTAAT 153 |||||||||||| || Sbjct 17227 GAATCGAACCCTTAT 17241 >seq184 Length=212989 Score = 86.0 bits (94), Expect = 2e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 || |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 34299 TTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTC 34248 >seq306 Length=173321 Score = 82.4 bits (90), Expect = 2e-13 Identities = 79/102 (77%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT 108 ||||||||| || | || |||||| ||| || |||||||||||||| || Sbjct 17913 TTGTCACTATTTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTGCC------ 17966 Query 109 GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 ||||||||||||||| |||| ||||||||||| || |||||| Sbjct 17967 GTGGTAGCCGTTTCTAAGGCCCCCTCTCCGGAGTCCAACCCT 18008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510303576064