Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq109 107 2e-18 >seq109 Length=251363 Score = 107 bits (118), Expect = 2e-18 Identities = 287/439 (65%), Gaps = 0/439 (0%) Strand=Plus/Plus Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||| || || || ||||||||||| || || ||||| || || | || ||||| Sbjct 60323 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTAT 60382 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 ||| ||||| || ||||| ||||| ||||||| | || || ||||| || || | || Sbjct 60383 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 60442 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | || ||| |||| || |||||| | || || || ||||| || | || || | Sbjct 60443 CATTGGATGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGT 60502 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 ||| ||| || || || || ||||||| || |||||| | || ||| | | Sbjct 60503 TCAAACCGATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAA 60562 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 | ||| |||| || || | | || |||| || | ||||| ||| || || Sbjct 60563 TACCGGCAATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATA 60622 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785 |||| | || || | || |||| || || || || || | | ||| || Sbjct 60623 GTGTTCCAGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGAT 60682 Query 66786 TGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCA 66845 ||||||| || || | ||||| || | ||||||||||| |||| ||| ||||| | Sbjct 60683 TGTACGTTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAA 60742 Query 66846 GGAGGTATTGAGGCCGTTC 66864 | | || ||| || ||||| Sbjct 60743 GCATGTGTTGTGGTCGTTC 60761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||| || || || ||||| | ||| ||||| || || ||| || |||| ||| Sbjct 58728 TTGGAAATCACCCGAAAGTACTCTGCGGCTGTAGATATTCGAAGTGTACGGCTCAATGGA 58787 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 ||| ||||||| |||||||| || || |||||||||||||| || || | ||| || Sbjct 58788 TTCGTTGTTGCCAAGAATTTGCGCCGTCGATGCAGTTGGCATCGGTGCAAGCAATAAACT 58847 Query 65551 GTTTCG 65556 |||||| Sbjct 58848 GTTTCG 58853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537067221760