Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5253 174 7e-41 >seq5253 Length=3867 Score = 174 bits (192), Expect = 7e-41 Identities = 221/309 (72%), Gaps = 30/309 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| ||| | |||||| ||||||| || Sbjct 1173 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCATATGCGCGAGTCATTGGGTGGTAA 1114 Query 465 ACCCGTGCGCGTAATGAAAGTGAACG----------------GAGGTGGGAACCC-GTG- 506 ||| ||||||||||||| || | || ||||| | ||| Sbjct 1113 ACCTAAAGGCGTAATGAAAGTAAAGGCTGTCTTGTTACGGCTGATATGGGATCTGTGTGG 1054 Query 507 ------------AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 | || ||||||| | || ||| | | ||| |||| ||| | Sbjct 1053 CTTTCGAGCCATACGGCGCACCATAGCCCCGTCCCGGTTGCTTGCAATGGGGCGGAGGTA 994 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| | | ||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 993 GAGCGCATACGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAG 934 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||| | || |||||||||| ||||||||||||||||| | ||||||| Sbjct 933 GAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTA 874 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 873 TAGGGGCGA 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079098992750