Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3849 98.7 9e-19 seq20948 91.5 1e-16 >seq3849 Length=5134 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 2639 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 2580 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 2579 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 2526 >seq20948 Length=1046 Score = 91.5 bits (100), Expect = 1e-16 Identities = 137/189 (72%), Gaps = 17/189 (9%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||||||||||| ||| || ||||||| ||||| |||| ||| |||||| |||| || Sbjct 638 ACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGGCGTGCTAATCTGCGATAAGCGTCG 697 Query 66 GGGATTGGCACATACGAA---TTGATCCGTAGATATCCGAATGGGGCAACCCGATAT-AT 121 | || | ||| ||| |||| ||| |||| |||||||||| ||||| | | | Sbjct 698 GCGA---GGTGATATGAACCTTTGACCCGGCGATACCCGAATGGGGAAACCCAGTGTGTT 754 Query 122 TGGAGATA-TATCAT------AACGC-TA--GGCGTTAGGCGAACGTGGGGAACTGAAAC 171 | || | | |||||| || | || ||| | |||||||| ||||||||||||| Sbjct 755 TCGACACACTATCATGTCATGAATACATAGTGGCATGAGGCGAACCGGGGGAACTGAAAC 814 Query 172 ATCTAAGTA 180 ||||||||| Sbjct 815 ATCTAAGTA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605978905