Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq12342 470 4e-130 seq12862 423 5e-116 seq3849 421 2e-115 >seq12342 Length=1752 Score = 470 bits (520), Expect = 4e-130 Identities = 298/323 (92%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 TACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 264 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 263 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGTAAGACAGATGT 204 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| |||||||||||||||| | ||||||| | ||| Sbjct 203 GAAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATGGCTAGAGTACGGTAGA 144 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 143 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 84 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 83 CGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 24 Query 303 GATTAGATACCCTGGTAGTCCAC 325 ||||||||||||||||||||||| Sbjct 23 GATTAGATACCCTGGTAGTCCAC 1 >seq12862 Length=1687 Score = 423 bits (468), Expect = 5e-116 Identities = 341/410 (83%), Gaps = 19/410 (5%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 656 AGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 715 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTGTGAAATC 128 ||||||||||||||||||||||||| |||||||||| ||| ||| | | ||||||||| Sbjct 716 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGT-CAAGTCGGATGTGAAATC 774 Query 129 CCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188 |||||||| |||||||||| |||||| | |||| | ||||||| | ||||||||| Sbjct 775 CCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAGAGGGGGG 834 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 | |||||||| ||||||| |||||||||||||| || |||||||| ||| ||||||||| Sbjct 835 TAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGG 894 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | ||||||||| || ||||||||||| | |||||||||||||||||||||||||||| Sbjct 895 CGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAG 954 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACT----AGTTG-----TTGGGGATTT 359 |||||||||||||||||||| |||||||| || ||| |||| ||| ||| | Sbjct 955 ATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTTCCCTTGAGGAGTG 1014 Query 360 ACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| || ||||||||||| |||| ||||||||||||| ||| Sbjct 1015 GCTTC--------CGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTAC 1056 >seq3849 Length=5134 Score = 421 bits (466), Expect = 2e-115 Identities = 337/402 (84%), Gaps = 3/402 (1%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 4205 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTT 4146 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||||| ||| ||| |||| |||| | |||||||||| Sbjct 4145 AATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCC 4086 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAGAGGGGGG 188 ||||||| |||||||||| |||||| |||| |||| ||||||| || |||||| || Sbjct 4085 CCGGGCTCAACCTGGGAACTGCATTCAAAACTG-ACGAGCTAGAGTATGGTAGAGGGTGG 4027 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||||| | ||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 4026 TGGAATTTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGG 3967 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || ||||| | | |||||| || | | |||||||||||||||||||||||||||| Sbjct 3966 CGACCACCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAG 3907 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCTT 367 |||||||||||||||||||| |||||||| |||||||| |||||| | || ||| Sbjct 3906 ATACCCTGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTGGGAGCCTTGAGCTCTT 3847 Query 368 GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||| | |||||||||||||||||| ||| Sbjct 3846 AGTGGCGCAGCTAACGCATTAAGTTGACCGCCTGGGGAGTAC 3805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289058303520