Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3849 540 3e-151 seq12862 475 1e-131 seq20948 385 1e-104 >seq3849 Length=5134 Score = 540 bits (598), Expect = 3e-151 Identities = 423/500 (85%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 3807 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 3748 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||||||||||||||||||||||||| |||||||||| ||| | || Sbjct 3747 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGCCTTGACATCCAATGAACTTTC 3688 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||||||| ||| |||||||| ||| | |||||||| ||||||| ||||||| Sbjct 3687 TAGAGATAGATTGGTG---CCTTCGGGA-ACATTGAGACAGGTGCTGCATGGCTGTCGTC 3632 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 3631 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCCTTAGTT 3572 Query 239 GCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 ||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3571 ACCAGCACGTAATGGTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGG 3512 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| |||||||| |||||| | |||||||||||||||||||||||| | Sbjct 3511 GGATGACGTCAAGTCATCATGGCCCTTACGGCCTGGGCTACACACGTGCTACAATGGTCG 3452 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||| || || ||||||||| ||| ||||||| ||| | || ||| ||| Sbjct 3451 GTACAGAGGGTTGCCAAGCCGCGAGGTGGAGCTAATCCCAGAAAACCGATCGTAGTCCGG 3392 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 || | |||||||||||||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 3391 ATCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGCGAATCAGAATG 3332 Query 477 CTACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 3331 TCGCGGTGAATACGTTCCCG 3312 >seq12862 Length=1687 Score = 475 bits (526), Expect = 1e-131 Identities = 399/497 (80%), Gaps = 36/497 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1054 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1113 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 1114 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCC----------- 1162 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 ||||| | | |||||||| ||||||| ||||||||| Sbjct 1163 -AGAGA-----------------------ANTGAGACAGGTGCTGCATGGCTGTCGTCAG 1198 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1199 CTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGC 1258 Query 241 CATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || | || | ||| |||| ||| ||||||| |||| |||| ||||||||||||||| Sbjct 1259 CAGCGGTTCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGA 1318 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| |||||||| |||||| || | ||||||||||||||||||||||| ||| Sbjct 1319 TGACGTCAAGTCATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGCGTATA 1378 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||| | ||||| |||||| ||||| | | |||||||| || ||| |||||| Sbjct 1379 CAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTACGTCGTAGTCCGGATT 1438 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| Sbjct 1439 GGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCTA 1498 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 1499 CGGTGAATACGTTCCCG 1515 >seq20948 Length=1046 Score = 385 bits (426), Expect = 1e-104 Identities = 337/415 (81%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 85 AGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCC--CCTTC 142 ||||||||||| | ||||||||||| || | |||||| | ||| ||||| Sbjct 1 AGAACCTTACCTACTCTTGACATCCAGAGAACTTAGCAGAGAT---GCTTTGGTGCCTTC 57 Query 143 GGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGT 202 ||| || | |||||||| ||||||| |||||||||||||||| |||| ||||||||| Sbjct 58 GGGA-ACTCTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGT 116 Query 203 TAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA-TTAAGTTGGGCACTCT 261 ||||||||||||||||||||||||||| ||| ||||||| | || | ||| |||| Sbjct 117 TAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTTCGGCCGGGAACTCA 176 Query 262 AAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCC 321 ||| ||||||| |||| |||| ||||||||||||||| |||||||| |||||||| ||| Sbjct 177 AAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCC 236 Query 322 TTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAG 381 ||| || | ||||||||||||||||||||||| |||||||| | ||||| |||||| Sbjct 237 TTACGAGTAGGGCTACACACGTGCTACAATGGCGTATACAAAGAGAAGCGACCTCGCGAG 296 Query 382 GTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATAT 441 ||||| | | |||||||| || ||| ||||||| |||||||||||||||| || Sbjct 297 AGCAAGCGGACCTCATAAAGTACGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT 356 Query 442 GAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 357 GAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCTACGGTGAATACGTTCCCG 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503368244800