Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq3849 641 0.0
seq12862 370 2e-100
seq12342 327 2e-87
seq21203 77.0 7e-12
seq3172 73.4 8e-11
>seq3849
Length=5134
Score = 641 bits (710), Expect = 0.0
Identities = 364/367 (99%), Gaps = 2/367 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 4265 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 4322
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4323 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4382
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4383 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 4442
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4443 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 4502
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4503 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 4562
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4563 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 4622
Query 361 CCGCTCG 367
|||||||
Sbjct 4623 CCGCTCG 4629
>seq12862
Length=1687
Score = 370 bits (410), Expect = 2e-100
Identities = 282/328 (86%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| |||||
Sbjct 596 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 539
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 479
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||
Sbjct 478 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 419
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|| |||||||||||| | || ||| |||||||| || |||||||||||||||| |||
Sbjct 418 CCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCTCTT 359
Query 241 TCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
| | | |||| |||||||||||||| |||||||| |||||||||| | | ||
Sbjct 358 T-GGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCA 300
Query 300 GGCAGATTCCTAGGCATTACTCACCCGT 327
||||| |||| || ||||||||||||||
Sbjct 299 GGCAGTTTCCCAGACATTACTCACCCGT 272
Score = 205 bits (226), Expect = 2e-50
Identities = 190/233 (82%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACC 199
||||||| || |||||||||||| ||||||||||||||||||| |||||||||||| | |
Sbjct 270 AGACCAGCTAGGGATCGTCGCCTAGGTGAGCCATTACCTCACCTACTAGCTAATCCCATC 211
Query 200 TAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGT-ATG 258
| ||| |||| ||| ||| |||||||||||||||| |||| | | | || || |||
Sbjct 210 TGGGCACATCCGATGGCGTGAGGCCCGAAGGTCCCCCACTTT-GCTCTTTCGAGGTCATG 152
Query 259 CGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTA 318
|||||||||| |||||||| |||||||||| | | ||||||| |||| || |||||
Sbjct 151 CGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTA 92
Query 319 CTCACCCGTCCGCCGCTC-TCAAGAGA-AGCAAGCT-TCTCT-CTACCGCTCG 367
|||||||||||||||||| ||| || |||||||| ||| | || |||||||
Sbjct 91 CTCACCCGTCCGCCGCTCGTCACCCGAGAGCAAGCTCTCTGTGCTGCCGCTCG 39
>seq12342
Length=1752
Score = 327 bits (362), Expect = 2e-87
Identities = 275/335 (82%), Gaps = 2/335 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| ||||| | | |||||||||||| ||||||||||||||||||||
Sbjct 377 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCATTG-CTGGATCAGGCTTTCGCCCA 434
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 435 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 494
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||| || |||||||||||||| ||| |||||||| |||||| ||| ||| | |||
Sbjct 495 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCAC 554
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
|||||| |||||| | | | ||| || || |||| |||||||||||||||| |||||
Sbjct 555 CAACTACCTAATCTGCCATCGGCCGCTCCAATCGCGCGAGGCCCGAAGGTCCCCCGCTTT 614
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| || || |||||||||||||||| | |||| |||||||||||| || ||
Sbjct 615 CATCCTCAGATCGTATGCGGTATTAGCTACTCTTTCGAGTAGTTATCCCCCACGACTGGG 674
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| |||| | | ||||||||||||| |||| |||
Sbjct 675 CACGTTCCGATGTATTACTCACCCGTTCGCCACTC 709
>seq21203
Length=1031
Score = 77.0 bits (84), Expect = 7e-12
Identities = 62/74 (84%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTC 110
|||||||||||||| || |||||| ||||||||||||| | || ||| ||| |||| ||
Sbjct 137 CTTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTGTGGGCCGTATC 78
Query 111 TCAGTTCCAGTGTG 124
||||| ||| ||||
Sbjct 77 TCAGTCCCATTGTG 64
>seq3172
Length=6020
Score = 73.4 bits (80), Expect = 8e-11
Identities = 71/90 (79%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTCT 111
||||||||||||| || |||||| ||||||||||||| | || ||| || |||| |||
Sbjct 3964 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTATGAGCCGTATCT 4023
Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAG 141
|||| ||| |||| | || ||||||||
Sbjct 4024 CAGTCCCATTGTGGTTATTCTACCTCTCAG 4053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071549706400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |