Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3849 641 0.0 seq12862 370 2e-100 seq12342 327 2e-87 seq21203 77.0 7e-12 seq3172 73.4 8e-11 >seq3849 Length=5134 Score = 641 bits (710), Expect = 0.0 Identities = 364/367 (99%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 4265 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 4322 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4323 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4382 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4383 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 4442 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4443 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 4502 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4503 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 4562 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4563 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 4622 Query 361 CCGCTCG 367 ||||||| Sbjct 4623 CCGCTCG 4629 >seq12862 Length=1687 Score = 370 bits (410), Expect = 2e-100 Identities = 282/328 (86%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 596 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 539 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 479 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| || Sbjct 478 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 419 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | || ||| |||||||| || |||||||||||||||| ||| Sbjct 418 CCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCTCTT 359 Query 241 TCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 | | | |||| |||||||||||||| |||||||| |||||||||| | | || Sbjct 358 T-GGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCA 300 Query 300 GGCAGATTCCTAGGCATTACTCACCCGT 327 ||||| |||| || |||||||||||||| Sbjct 299 GGCAGTTTCCCAGACATTACTCACCCGT 272 Score = 205 bits (226), Expect = 2e-50 Identities = 190/233 (82%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACC 199 ||||||| || |||||||||||| ||||||||||||||||||| |||||||||||| | | Sbjct 270 AGACCAGCTAGGGATCGTCGCCTAGGTGAGCCATTACCTCACCTACTAGCTAATCCCATC 211 Query 200 TAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGT-ATG 258 | ||| |||| ||| ||| |||||||||||||||| |||| | | | || || ||| Sbjct 210 TGGGCACATCCGATGGCGTGAGGCCCGAAGGTCCCCCACTTT-GCTCTTTCGAGGTCATG 152 Query 259 CGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTA 318 |||||||||| |||||||| |||||||||| | | ||||||| |||| || ||||| Sbjct 151 CGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTA 92 Query 319 CTCACCCGTCCGCCGCTC-TCAAGAGA-AGCAAGCT-TCTCT-CTACCGCTCG 367 |||||||||||||||||| ||| || |||||||| ||| | || ||||||| Sbjct 91 CTCACCCGTCCGCCGCTCGTCACCCGAGAGCAAGCTCTCTGTGCTGCCGCTCG 39 >seq12342 Length=1752 Score = 327 bits (362), Expect = 2e-87 Identities = 275/335 (82%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | |||||||||||| |||||||||||||||||||| Sbjct 377 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCATTG-CTGGATCAGGCTTTCGCCCA 434 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 435 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 494 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| |||||||| |||||| ||| ||| | ||| Sbjct 495 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCAC 554 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| | | | ||| || || |||| |||||||||||||||| ||||| Sbjct 555 CAACTACCTAATCTGCCATCGGCCGCTCCAATCGCGCGAGGCCCGAAGGTCCCCCGCTTT 614 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | || || |||||||||||||||| | |||| |||||||||||| || || Sbjct 615 CATCCTCAGATCGTATGCGGTATTAGCTACTCTTTCGAGTAGTTATCCCCCACGACTGGG 674 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | | ||||||||||||| |||| ||| Sbjct 675 CACGTTCCGATGTATTACTCACCCGTTCGCCACTC 709 >seq21203 Length=1031 Score = 77.0 bits (84), Expect = 7e-12 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTC 110 |||||||||||||| || |||||| ||||||||||||| | || ||| ||| |||| || Sbjct 137 CTTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTGTGGGCCGTATC 78 Query 111 TCAGTTCCAGTGTG 124 ||||| ||| |||| Sbjct 77 TCAGTCCCATTGTG 64 >seq3172 Length=6020 Score = 73.4 bits (80), Expect = 8e-11 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTCT 111 ||||||||||||| || |||||| ||||||||||||| | || ||| || |||| ||| Sbjct 3964 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTATGAGCCGTATCT 4023 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAG 141 |||| ||| |||| | || |||||||| Sbjct 4024 CAGTCCCATTGTGGTTATTCTACCTCTCAG 4053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071549706400