Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3849 654 0.0 seq20948 75.2 3e-11 >seq3849 Length=5134 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1888 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 1945 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 1946 GT-GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 2000 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 2001 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 2059 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2060 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACA 2118 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2119 AAGTCTGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 2178 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2179 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 2238 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2239 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 2296 >seq20948 Length=1046 Score = 75.2 bits (82), Expect = 3e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||||||||||| | || |||| ||| |||||| Sbjct 1046 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATGTCACGTGTCCCGCCCTACT 987 Query 419 C 419 | Sbjct 986 C 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241078465920