Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3849 203 6e-50 seq12342 201 2e-49 seq12862 176 9e-42 seq21203 82.4 2e-13 seq3172 82.4 2e-13 >seq3849 Length=5134 Score = 203 bits (224), Expect = 6e-50 Identities = 232/306 (76%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 4297 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 4356 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||| Sbjct 4357 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 4416 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| | ||||||||| |||||| | | || ||||| | Sbjct 4417 CGTCGCCTTGGTGAGCCATTACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATA 4476 Query 181 GCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC-TCTGACATTATGCGGTATTAGCGT 238 ||| | | |||| || | | || | ||| |||||||||||||||| Sbjct 4477 GCGCAAGGCCCGAAGGTC---CCCTGCTTTCTCCCGTAGGAC-GTATGCGGTATTAGCGT 4532 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||| |||||||| || | || |||||| || || | | |||||||||||||| Sbjct 4533 CCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCC 4591 Query 299 GCCACT 304 ||| || Sbjct 4592 GCCGCT 4597 >seq12342 Length=1752 Score = 201 bits (222), Expect = 2e-49 Identities = 143/164 (87%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| ||| || ||||||||||||||||||||| Sbjct 408 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 467 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 468 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGAT 527 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 |||||||||||| ||| ||||| |||||||||||||||| ||| Sbjct 528 CGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCC 571 >seq12862 Length=1687 Score = 176 bits (194), Expect = 9e-42 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 564 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 505 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| ||| Sbjct 504 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 445 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||| | |||| |||| |||||| Sbjct 444 CGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATC 405 >seq21203 Length=1031 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGG-AGTCTGGGCCGTGTCT 77 |||| |||||||| || || ||| ||||||||||||| | || ||| |||||||| ||| Sbjct 136 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTGTGGGCCGTATCT 77 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||||| ||||| ||| |||||| || Sbjct 76 CAGTCCCATTGTGGTTATTCTACCTCTGAG 47 >seq3172 Length=6020 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGG-AGTCTGGGCCGTGTCT 77 |||| |||||||| || || ||| ||||||||||||| | || ||| || ||||| ||| Sbjct 3964 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTATGAGCCGTATCT 4023 Query 78 CAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||||| ||||| ||| ||||||||| Sbjct 4024 CAGTCCCATTGTGGTTATTCTACCTCTCAG 4053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997980622080