Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq12342 230 4e-58
seq12862 224 2e-56
seq3849 221 2e-55
>seq12342
Length=1752
Score = 230 bits (254), Expect = 4e-58
Identities = 225/290 (78%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| || | ||||||||| |||||| |||||||||| |||||
Sbjct 34 CCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGGGATTGCCTTCGCCATCGGTGT 93
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | | ||
Sbjct 94 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTACCGTAC 153
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || | |||| ||||||||| |||||||||| | ||||||||||| ||
Sbjct 154 TCTAGCCATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTCT 213
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | | |||||| | | | |||||| |||| ||| |||| ||||||| || ||||||
Sbjct 214 TACATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 273
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 274 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTA 323
>seq12862
Length=1687
Score = 224 bits (248), Expect = 2e-56
Identities = 219/282 (78%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| |
Sbjct 938 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 879
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 878 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 819
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || ||||||| ||||||| |||||||||| | ||||||||| ||||
Sbjct 818 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 759
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| ||
Sbjct 758 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 699
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
|||||||||||||||||||||| ||||||||| |||| |||
Sbjct 698 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTC 657
>seq3849
Length=5134
Score = 221 bits (244), Expect = 2e-55
Identities = 218/282 (77%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||
Sbjct 3923 CCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCCACTGGTGT 3982
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| | ||||||||||||||||||||||||||| | |||||| ||||| | ||
Sbjct 3983 TCCTTCCTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCTACCATAC 4042
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || |||||| ||||||| |||||||||| | ||||||||| |||
Sbjct 4043 TCTAGCTCGTCAGTTTTGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCAACT 4102
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | || ||||| ||| |||||| |||| ||| |||| |||||||||| ||| |
Sbjct 4103 TAACGAACCACCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCTG 4162
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
||||||||||||||||||||| ||||||||| ||||||||
Sbjct 4163 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 4204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828462741855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |