Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq41264 242 6e-62
seq12342 223 5e-56
seq3849 199 6e-49
>seq41264
Length=509
Score = 242 bits (268), Expect = 6e-62
Identities = 196/237 (83%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| |
Sbjct 273 GAGGCGCGCTTCCCGCTTAGATGCTTTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 332
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| |||| |||| ||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 333 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 392
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| |
Sbjct 393 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 452
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGG 238
||||||||||||||||||||||| || |||||| ||||||||||| |||||||||
Sbjct 453 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGG 509
>seq12342
Length=1752
Score = 223 bits (246), Expect = 5e-56
Identities = 196/242 (81%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| |||||| |||||||| | | || |||| ||||
Sbjct 1512 GCTTAGATGCTTTCAGCGGTTATCTCTTCCACACTTAGCTACTCGGCAATGCCACTGGCG 1571
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134
||||| | | |||||||||| |||||| ||||||||||||||||| | || ||| |
Sbjct 1572 TGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 1631
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194
||||||| | | |||||||| |||||||||| ||||||||| ||||||| | ||||
Sbjct 1632 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 1690
Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254
|||||| ||| ||||||||| ||||||||||| |||||||||||| ||| ||||||||
Sbjct 1691 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTACAGCCCCA 1750
Query 255 GG 256
||
Sbjct 1751 GG 1752
>seq3849
Length=5134
Score = 199 bits (220), Expect = 6e-49
Identities = 143/165 (87%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 111 TCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCG 170
||||||||||||| | |||| |||||||||| || ||| ||||| | |||||||||||
Sbjct 1 TCCTCTCGTACTAGGAGCAGCCCCTCTCAAATCTCAAACGTCCACGGCAGATAGGGACCG 60
Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230
||||||||| ||||||||| |||||||||||||| || |||||| ||||||||||| |
Sbjct 61 AACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATA 120
Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 121 CCCTTGGGACCGGCTTCAGCCCCAGGATGTGATGAGCCGACATCG 165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780482274180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |