Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq12862 538 8e-151 seq3849 471 1e-130 seq12342 403 4e-110 seq21203 75.2 3e-11 seq3172 73.4 1e-10 >seq12862 Length=1687 Score = 538 bits (596), Expect = 8e-151 Identities = 316/328 (96%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 540 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 480 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 479 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCC 420 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 || |||||||||||||||||||| |||| ||| | |||||||||||||||||||||| Sbjct 419 ACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCTCT 360 Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 359 TTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCA 300 Query 301 GGCAGTTTCCCAGACATTACTCACCCGT 328 |||||||||||||||||||||||||||| Sbjct 299 GGCAGTTTCCCAGACATTACTCACCCGT 272 Score = 349 bits (386), Expect = 8e-94 Identities = 242/272 (89%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATC 200 |||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||| Sbjct 270 AGACCAGCTAGGGATCGTCGCCTAGGTGAGCCATTACCTCACCTACTAGCTAATCCCATC 211 Query 201 TGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGC 260 |||| |||||||| | | |||||||||||||||||| ||||| |||| ||| || |||| Sbjct 210 TGGGCACATCCGATGGCGTGAGGCCCGAAGGTCCCCCACTTTGCTCTTTCGAGGTCATGC 151 Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 150 GGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 91 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 ||||||||||||| ||||||| | || |||||||| || || | ||| ||||||||| Sbjct 90 TCACCCGTCCGCCGCTCGTCACCCGAG-AGCAAGCT-CTCTGTGCTGCCGCTCGACTTGC 33 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTG 412 ||||||||||||| ||||||||||||| |||| Sbjct 32 ATGTGTTAGGCCTACCGCCAGCGTTCACTCTG 1 >seq3849 Length=5134 Score = 471 bits (522), Expect = 1e-130 Identities = 358/415 (86%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |||| Sbjct 4262 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 4321 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4322 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 4381 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| Sbjct 4382 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCC 4441 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || || ||||| ||||| | |||||||||||||||| || Sbjct 4442 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 4501 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | |||| |||||||||||||| |||||||| |||||||||| | | | Sbjct 4502 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 4560 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||| || ||||||||||||||||||| ||| ||| || |||||||| || Sbjct 4561 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 4617 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4618 --CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 4669 >seq12342 Length=1752 Score = 403 bits (446), Expect = 4e-110 Identities = 339/412 (82%), Gaps = 12/412 (3%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || | |||||||||| |||| ||||||||| |||||||| Sbjct 377 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATTGCTGGATCAGGCTTTCGCCCATT 436 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 437 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 496 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| |||||||| || ||| || ||| ||| ||| Sbjct 497 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCA 556 Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||| |||||| ||||| || ||| || | | |||||||||||||||||| |||| Sbjct 557 ACTACCTAATCTGCCATC--GGCCGCTCCAATCGCGCGAGGCCCGAAGGTCCCCCGCTTT 614 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 || | || |||||||||||||| || |||| ||| |||||||||| | | || Sbjct 615 CATCCTCAGATCGTATGCGGTATTAGCTACTCTTTCGAGTAGTTATCCCCCACGACTGGG 674 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | ||||||||||||| ||||||||||||||| | | ||| || Sbjct 675 CACGTTCCGATGTATTACTCACCCGTTCGCCACTCGTCAGCG--TCCG-AAG-----ACC 726 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 727 TGTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 778 >seq21203 Length=1031 Score = 75.2 bits (82), Expect = 3e-11 Identities = 72/91 (79%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 53 CTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTC 111 ||| |||||||||| || |||||| ||||||||||||| | || ||| ||| |||| || Sbjct 137 CTTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTGTGGGCCGTATC 78 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||| ||| ||||| | || ||||| || Sbjct 77 TCAGTCCCATTGTGGTTATTCTACCTCTGAG 47 >seq3172 Length=6020 Score = 73.4 bits (80), Expect = 1e-10 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTCT 112 || |||||||||| || |||||| ||||||||||||| | || ||| || |||| ||| Sbjct 3964 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTATGAGCCGTATCT 4023 Query 113 CAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 |||| ||| ||||| | || |||||||| Sbjct 4024 CAGTCCCATTGTGGTTATTCTACCTCTCAG 4053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221886530880