Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq12862 538 8e-151
seq3849 471 1e-130
seq12342 403 4e-110
seq21203 75.2 3e-11
seq3172 73.4 1e-10
>seq12862
Length=1687
Score = 538 bits (596), Expect = 8e-151
Identities = 316/328 (96%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 540
Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 480
Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 479 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCC 420
Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240
|| |||||||||||||||||||| |||| ||| | ||||||||||||||||||||||
Sbjct 419 ACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCTCT 360
Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 359 TTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCA 300
Query 301 GGCAGTTTCCCAGACATTACTCACCCGT 328
||||||||||||||||||||||||||||
Sbjct 299 GGCAGTTTCCCAGACATTACTCACCCGT 272
Score = 349 bits (386), Expect = 8e-94
Identities = 242/272 (89%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATC 200
|||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||
Sbjct 270 AGACCAGCTAGGGATCGTCGCCTAGGTGAGCCATTACCTCACCTACTAGCTAATCCCATC 211
Query 201 TGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGC 260
|||| |||||||| | | |||||||||||||||||| ||||| |||| ||| || ||||
Sbjct 210 TGGGCACATCCGATGGCGTGAGGCCCGAAGGTCCCCCACTTTGCTCTTTCGAGGTCATGC 151
Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 150 GGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 91
Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380
||||||||||||| ||||||| | || |||||||| || || | ||| |||||||||
Sbjct 90 TCACCCGTCCGCCGCTCGTCACCCGAG-AGCAAGCT-CTCTGTGCTGCCGCTCGACTTGC 33
Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTG 412
||||||||||||| ||||||||||||| ||||
Sbjct 32 ATGTGTTAGGCCTACCGCCAGCGTTCACTCTG 1
>seq3849
Length=5134
Score = 471 bits (522), Expect = 1e-130
Identities = 358/415 (86%), Gaps = 8/415 (2%)
Strand=Plus/Plus
Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60
|| |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 4262 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 4321
Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4322 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 4381
Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180
||||| ||| ||||||||||||||||| || |||||||||||| |||| |||||||||||
Sbjct 4382 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCC 4441
Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240
||||||||||||||| | || || ||||| ||||| | |||||||||||||||| ||
Sbjct 4442 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 4501
Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299
|| | | |||| |||||||||||||| |||||||| |||||||||| | | |
Sbjct 4502 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 4560
Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359
|||||| |||| || ||||||||||||||||||| ||| ||| || |||||||| ||
Sbjct 4561 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 4617
Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4618 --CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 4669
>seq12342
Length=1752
Score = 403 bits (446), Expect = 4e-110
Identities = 339/412 (82%), Gaps = 12/412 (3%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|||||||||||||||||||| || | |||||||||| |||| ||||||||| ||||||||
Sbjct 377 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATTGCTGGATCAGGCTTTCGCCCATT 436
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 437 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 496
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|||||||| ||||||||||||||||| |||||||| || ||| || ||| ||| |||
Sbjct 497 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCA 556
Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242
|||| |||||| ||||| || ||| || | | |||||||||||||||||| ||||
Sbjct 557 ACTACCTAATCTGCCATC--GGCCGCTCCAATCGCGCGAGGCCCGAAGGTCCCCCGCTTT 614
Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302
|| | || |||||||||||||| || |||| ||| |||||||||| | | ||
Sbjct 615 CATCCTCAGATCGTATGCGGTATTAGCTACTCTTTCGAGTAGTTATCCCCCACGACTGGG 674
Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362
|| |||| | ||||||||||||| ||||||||||||||| | | ||| ||
Sbjct 675 CACGTTCCGATGTATTACTCACCCGTTCGCCACTCGTCAGCG--TCCG-AAG-----ACC 726
Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 727 TGTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 778
>seq21203
Length=1031
Score = 75.2 bits (82), Expect = 3e-11
Identities = 72/91 (79%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 53 CTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTC 111
||| |||||||||| || |||||| ||||||||||||| | || ||| ||| |||| ||
Sbjct 137 CTTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTGTGGGCCGTATC 78
Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
||||| ||| ||||| | || ||||| ||
Sbjct 77 TCAGTCCCATTGTGGTTATTCTACCTCTGAG 47
>seq3172
Length=6020
Score = 73.4 bits (80), Expect = 1e-10
Identities = 71/90 (79%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 54 TTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACCGTGTCT 112
|| |||||||||| || |||||| ||||||||||||| | || ||| || |||| |||
Sbjct 3964 TTTCGCCCATTGTAGAAAATTCCCTACTGCTGCCTCCCTTGGGTAGTATGAGCCGTATCT 4023
Query 113 CAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
|||| ||| ||||| | || ||||||||
Sbjct 4024 CAGTCCCATTGTGGTTATTCTACCTCTCAG 4053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221886530880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |