Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq12862 311 3e-82
seq12342 298 2e-78
seq3849 293 7e-77
>seq12862
Length=1687
Score = 311 bits (344), Expect = 3e-82
Identities = 282/359 (79%), Gaps = 26/359 (7%)
Strand=Plus/Plus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
||||||||||| ||| |||||||||| ||| ||||||||||| |||| | |||||||
Sbjct 405 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 464
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| ||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 465 GATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG 524
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||||||||||||||||| |||||||||||||| | |||||||| || |||||||||
Sbjct 525 GAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTT 584
Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------TAA-------------TG 381
||||| |||||| || || | |||| || ||| ||
Sbjct 585 CGGGTTGTAAAGTACTTTCAGCGAGGAGGAAGGCATTGTGGTTAATAACCACAGTGATTG 644
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
||| |||| | || ||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 645 ACGTTACTCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 704
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| || ||||||| |||||||||| |||||||||| | || ||| ||| | | |||||
Sbjct 705 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTC 762
>seq12342
Length=1752
Score = 298 bits (330), Expect = 2e-78
Identities = 276/350 (79%), Gaps = 26/350 (7%)
Strand=Plus/Minus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
|||||| |||||||| | ||| |||||||||| |||||||| ||||| | |||||||
Sbjct 567 GATTAGGTAGTTGGTGGGATAAAAGCTTACCAAGCCGACGATCTGTAGCTGGTCTGAGAG 508
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286
| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 507 GACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 448
Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||| ||| ||||||||| |||||||||| |||||| |||||||| ||||||||||||
Sbjct 447 GAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGCAGGATGAAGGCCTT 388
Query 347 CGGGTCGTAAA--GC-TCTGTCCTCAAGGAAGA---------TA-------------ATG 381
||||| ||||| || | ||| | || ||| | || |||
Sbjct 387 CGGGTTGTAAACTGCTTTTGTACGGAACGAAAAAGCTCCTTCTAATACAGGGGGCCCATG 328
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
||||||| | || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 327 ACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 268
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491
| || ||||||| |||||||||| |||||||||| ||||| ||| ||||
Sbjct 267 GTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 219
>seq3849
Length=5134
Score = 293 bits (324), Expect = 7e-77
Identities = 281/362 (78%), Gaps = 26/362 (7%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222
||| ||||||||||||||| ||||| |||| ||||||||||||||| ||| | | |||
Sbjct 4460 GTCGGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 4401
Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282
||||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 4400 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 4341
Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342
|||||||||||| ||||||||| |||||||||| |||| | |||||||| | || |||||
Sbjct 4340 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 4281
Query 343 CCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA--------- 378
|||||| | ||||||| || | |||||| |||
Sbjct 4280 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTAAATTAATACTTTGCTGT 4221
Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437
||||| ||| || |||| |||||||||| ||||||||||||||||||||||
Sbjct 4220 TTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 4161
Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497
|||| || ||||||| |||||||||| |||||||||| | |||||||||||| ||||
Sbjct 4160 GAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTCGTTAA 4102
Query 498 GT 499
||
Sbjct 4101 GT 4100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1496970933120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |