Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24] 42,005 sequences; 126,869,778 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3849 343 5e-92 >seq3849 Length=5134 Score = 343 bits (380), Expect = 5e-92 Identities = 422/568 (74%), Gaps = 20/568 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 300 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 358 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||||| | |||||||| Sbjct 359 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCA 417 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| |||||||| | | || ||| | || || |||||| || Sbjct 418 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAA--CCT 475 Query 180 CTACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | | ||| |||||||||||| | |||||| ||| |||| ||| ||| Sbjct 476 CAAAGTTGCCAGGGTGGTATTTCAAGGTTGGCTCCACGCGAACTGGCGTCCACGCTTCAA 535 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || |||||||||||||||||||| | | || ||| | | |||||||||| ||||| Sbjct 536 AGCCTCCCACCTATCCTACACAAGCAAATTCAAAGTCCAGTGCAAAGCTATAGTAAAGGT 595 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTC 355 | |||||||||| |||| |||||| || || ||||||| || | | ||||||| Sbjct 596 TCACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTC 654 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 || | | || ||| |||||||| | |||||||||||||||||||||||||||||| Sbjct 655 ACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 714 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 715 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 774 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | || || | || ||| || | |||||||||| || Sbjct 775 CTTCGATCAAGAGCTTCGC----------GTTAGCTAACCCCATCAATTAACCTTCCGGC 824 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 825 ACCGGGCAGGCGTCACACCCTATACGTC 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701684906880