Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anisakis_20simplex_20[genbank_20GCA_5F000951095.1_202014-09-24]
42,005 sequences; 126,869,778 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq12342 205 2e-50
seq12862 178 3e-42
seq3849 174 3e-41
>seq12342
Length=1752
Score = 205 bits (226), Expect = 2e-50
Identities = 218/285 (76%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59
||||||||||||| ||||||||| ||||||||| || ||||| || | ||| |
Sbjct 283 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATGGGCCCCCTGTA 342
Query 60 -TGGAAGG----TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114
| ||||| |||| | || || ||||| ||||||||| ||| || ||||||||||
Sbjct 343 TTAGAAGGAGCTTTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCCT 401
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
||||| | | ||||| |||| || ||| |||||| |||| ||||| ||||||||||||
Sbjct 402 GCACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTC 461
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234
|||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | ||
Sbjct 462 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 521
Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| ||||| |||| ||| || ||| ||| || ||||||||||
Sbjct 522 ACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAAT 566
>seq12862
Length=1687
Score = 178 bits (196), Expect = 3e-42
Identities = 159/198 (80%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
|||| | ||||||| ||| || ||||| || | ||||| | |||||| |||| ||
Sbjct 602 AAAGTACTTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTG 544
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 543 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 484
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
|||| ||||| | | |||||||||| | ||| ||||| | ||||||| |||||||
Sbjct 483 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTA 424
Query 262 CCCCGCCTACTACCTAAT 279
|||| ||||||| |||||
Sbjct 423 CCCCACCTACTAGCTAAT 406
>seq3849
Length=5134
Score = 174 bits (192), Expect = 3e-41
Identities = 154/191 (81%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148
||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| ||||
Sbjct 4266 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCAT 4324
Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 4325 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 4384
Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268
|| || | |||||||||| | || ||||| | || |||| ||| ||||||| ||
Sbjct 4385 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 4444
Query 269 TACTACCTAAT 279
|||| |||||
Sbjct 4445 AACTAGCTAAT 4455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068351050560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |