Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1040 196 7e-48 seq4304 75.2 2e-11 >seq1040 Length=62949 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 2553 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 2496 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 2495 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 2436 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 2435 ACCAATACCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 2377 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 2376 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 2331 >seq4304 Length=15894 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| |||||| || | |||| |||| | ||||||| ||| ||| Sbjct 1974 GTACAAAGGGCACGGACGTAATCAACGTGAAC-TGATAACTCACACTTACTATGAA-TTC 2031 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| ||| | ||||||||| Sbjct 2032 CTCGTTCAAGGGAGATAATTGCAAT 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751768992650