Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20lumbricoides_20[genbank_20GCA_5F000951055.1_202014-09-24] 31,710 sequences; 316,975,410 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4321 165 3e-38 seq1541 75.2 5e-11 >seq4321 Length=15796 Score = 165 bits (182), Expect = 3e-38 Identities = 115/130 (88%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 || ||||| || ||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 15704 AGCGCATA--TGCTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGA 15647 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || |||||||||| ||||||||||||||||| | |||||| Sbjct 15646 GGAAACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGT 15587 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 15586 ATAGGGGCGA 15577 >seq1541 Length=46490 Score = 75.2 bits (82), Expect = 5e-11 Identities = 58/68 (85%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 || ||||| || ||||| ||||||||||||||||||| ||| | |||| |||| ||||| Sbjct 10606 AGCGCATA--TGCTGGGATCCGAAAGATGGTGAACTATACCTAAGTAGGATGAAACCAGA 10663 Query 614 GGAAACTC 621 |||||||| Sbjct 10664 GGAAACTC 10671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079319820500