Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq88 131 3e-28 seq849 75.2 2e-11 >seq88 Length=586650 Score = 131 bits (144), Expect = 3e-28 Identities = 163/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTAC-TAGGAATTTCC 61 ||||||||||||||||| |||||| ||||| ||||| || | ||| | |||||||| | Sbjct 531760 ACAAAGGGCAGGGACGTCATCAACGTGAGCT-GATGATTCACACTTTCATAGGAATT-CG 531703 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||| ||| || |||| |||| | || || ||||| | |||||| | ||| Sbjct 531702 TCGTTCAAGGGAAATAATTCCAATTCCCGATTCCGATCACCGAGGCTTTTCAAGGGGTTA 531643 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || ||| ||||| | ||| | || | || || | | ||| ||||||||||||| | Sbjct 531642 CCAATACCCTTCGGCAATGGTTACAG-CACGCGGATTCCTCCAGGGTAGCGCGCGTGCAG 531584 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | |||||||||||| |||||||||||||||||| Sbjct 531583 CCCTGGACATCTAAGGGCCTCACAGACCTGTTATTGC 531547 >seq849 Length=55802 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| |||||| || | |||| |||| | ||||||| ||| ||| Sbjct 1736 GTACAAAGGGCACGGACGTAATCAACGTGAAC-TGATAACTCACACTTACTATGAA-TTC 1793 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| ||| | ||||||||| Sbjct 1794 CTCGTTCAAGGGAGATAATTGCAAT 1818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751905382420